Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2766 GGTGTATTTTAAGGGTTTAGTGAGTGAAGAGACTGTGAGAGGTGAGAAGGTTTTGTTGGCTGGGATTGGTGTTGCGGTTTGTGATTTGACTGATAATTTGATTTTTGAAGTTTCTAAATCTGTGGTTGGGAATGGAACTAGTAAAATTGTTGTGGAGCTTAAGGCTTTGATTGAAGCTTTCAATGCTGTTATTGCTTTGGATTTGACGCGTGTTAGTTATTATGGTGATTACTATCCACTTTTCCAATTTTTAAGTGGAATATGGCCTGCGAAACAGCGGAAGATTGCTATGCTAGTTAATCAGGTGAATCTGCTCCAAAGAAAATTTGAATACTGCAGTCCAAGGCTTGTGGCAAGACATGATCTGAAATTTGCATTAAAGCTTGCAAGAGATGCAATTGTTTCTCAGTCCAATAGGCCTGCTGAATCTAGCAGTGTAAACAGTCTGAATGAAACTTGTGTCATTTGTTTGGAGGATACTGATCATAGTCAAATATTTTCAGTTGATGCATGTCAGCACATGTATTGCTTTTCTTGCATGAAGCAACAAGTGGAGGTGAAGTTGCTTCATGGAATGGTGCCAAAATGCCCTCACGAGGGATGCAAGAATGAACTTCTAATTGACAGTTGCCGGAAATTCTTGACTTCTAAATTAATTGAAACCTGCAACAAACAACAAAGTTAG 685 0.3869 VYFKGLVSEETVRGEKVLLAGIGVAVCDLTDNLIFEVSKSVVGNGTSKIVVELKALIEAFNAVIALDLTRVSYYGDYYPLFQFLSGIWPAKQRKIAMLVNQVNLLQRKFEYCSPRLVARHDLKFALKLARDAIVSQSNRPAESSSVNSLNETCVICLEDTDHSQIFSVDACQHMYCFSCMKQQVEVKLLHGMVPKCPHEGCKNELLIDSCRKFLTSKLIETCNKQQS* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2766 227 ProSiteProfiles Zinc finger RING-type profile. 153 197 IPR001841 -
Psa3g2766 227 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 2 224 - -
Psa3g2766 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 227 IPR013083 -
Psa3g2766 227 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 2 224 IPR031127 GO:0004842|GO:0016567
Psa3g2766 227 Pfam Reverse transcriptase-like 18 132 IPR002156 GO:0003676|GO:0004523
Psa3g2766 227 ProSitePatterns Zinc finger RING-type signature. 171 180 IPR017907 -
Psa3g2766 227 Gene3D - 1 141 IPR036397 GO:0003676
Psa3g2766 227 SUPERFAMILY RING/U-box 151 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2766 Psa-Chr3 231352247 231352931 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2766 1 219 C3H Transcription Factor Family AT2G19610 29.148 1.31e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2766 - - gmx:100786163 363.999