Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2756 ATGAATCGTTTTTGGTTAGGTCTTGAGTGGAACCTAAACAGAACTGCTAATGGTTCCCACCGACTGAAGATAAACCAATGCCACCAAGACAGTGCAGAAGTTAGGAGACCTCTGGAAGAACTGTCGAGAGGAAAACTCATTGACCATGGAAGCCTTCCTCCGCAGCTCTACAACTCATTTTGTCCAGAGAGGGCATTAATCTCAAGGCTAAAAGAGAAGGTACCTGGGGCTGATCTCAAACTTAACACACGCCAACAGGCAATTTTTCTCAATGGTCAAGGAGTTGAAAACAGAGTAGAGGAAATAACTTTGGAGGTTGCGTGTTCAAGCATTCATTTAGTTGAGAGACTCGACACAGGACCTAGTTGCCCAGTTTGCTTGGTGAGGTTGAGGATGGATATCAACTTGAAGGCTGTCGTCATTTGTTCTGCCGGTTGTGGTCTGGTTGAGCAGTGTGAATCTGCTATAAGAACCAAGGCAGTTTCCCAATATGTTGTGCTCACACGGGCTGTGGAGATCCTATTCTGCTTACAGATTTCAGACTCTCCTGGCTTCTTTGCAGCTTTTGTAGCTTCGAGTTCAGGAACTTATAGGTTTTGCCCGTCTCCCGACTGCCCCTCAATTTATCGAGTTGCAGATCCCGACACAGGTAGTGAGCCATTTACTTGCGGAGCATGTTATTCAGACACTTGTACCAAGTGCCACTTAGAGTATCATCCATTCGTTTCATGCGAGAGATACCGGGAGCTTAAAGATGACCCAGAGATCACATCTCTGAGGGAGTGGTGTAAAGGGAAAGAACAAGTCAAGAGCTGCTCTGCTTGTGGGCAAATAATTGAAAAGGTTGATGGGTGCAATCACATTGAGTGCAAGTGCGGAAAACATGTCTGCTGGGTTTGCTTGGAAATATTTTTAGAAAGTGATGAATGTTATGATCATATGAGAACTATACACTTATCCATATAA 966 0.4462 MNRFWLGLEWNLNRTANGSHRLKINQCHQDSAEVRRPLEELSRGKLIDHGSLPPQLYNSFCPERALISRLKEKVPGADLKLNTRQQAIFLNGQGVENRVEEITLEVACSSIHLVERLDTGPSCPVCLVRLRMDINLKAVVICSAGCGLVEQCESAIRTKAVSQYVVLTRAVEILFCLQISDSPGFFAAFVASSSGTYRFCPSPDCPSIYRVADPDTGSEPFTCGACYSDTCTKCHLEYHPFVSCERYRELKDDPEITSLREWCKGKEQVKSCSACGQIIEKVDGCNHIECKCGKHVCWVCLEIFLESDECYDHMRTIHLSI* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2756 321 ProSiteProfiles TRIAD supradomain profile. 119 321 IPR044066 -
Psa3g2756 321 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 68 316 - -
Psa3g2756 321 SUPERFAMILY RING/U-box 193 249 - -
Psa3g2756 321 SUPERFAMILY RING/U-box 267 315 - -
Psa3g2756 321 SMART ibrneu5 185 244 IPR002867 -
Psa3g2756 321 SMART ibrneu5 245 310 IPR002867 -
Psa3g2756 321 Pfam IBR domain, a half RING-finger domain 189 244 IPR002867 -
Psa3g2756 321 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 68 316 IPR031127 GO:0004842|GO:0016567
Psa3g2756 321 Gene3D - 240 319 - -
Psa3g2756 321 ProSitePatterns Zinc finger C2H2 type domain signature. 297 318 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2756 Psa-Chr3 230964628 230965846 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2756 185 300 ARIADNE family AT3G27720 31.405 6.24e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2756 K12818 - mtr:MTR_1g037750 322.783