Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2748 ATGGCATCCCCAATTCAGATTGCAAGACCACCTGTTAAACGACGACGACGCAAAAACATATCTCCCCGTAATTTGCCAAAGATTACTGATCAAGAACTAACGCAATTATCTGGAGATTTAAATTCCACCATTGTGCCATTGTTTGAGAAGACATTGTCTGCGAGTGATGTTGGTCGACTTGGTCGCATGGTTCTTCCGAAACCATGTGTTGAAGCGTATTTTCCTCCGATTTCTGAACCAGGGGGAATTTATTTACATATTGAAGACGTGAAAGGGAAGAAACTGATGTTTAGATTTAGATTTTGGCCAAATAATAGTAGCAGGATATATGTTTTAGAAGGTGTACATCCTTGGATTCTCTCTATGCAGTTGCAAGCTGGAGATTTTGTAACATTTAGCCGGATGGACCCCGGGGAGATACTAATAATAGGGTTTCGAAAGACATCAAATTCTTCTACGCAGGTGCATGAAATTACTTTGCCTAAAGGCATGAAAAGAGAGGGAATGCATCTTCCACAAGAGCTTGTTCCTGAGAAGAAACAAAAAACATGTGACATTGGTTCGAAAAGTAGGAGGCTGGTTATTGATAACCAAGATGCATTGATGTTGAAGCTTACTTGGGAAGAGGCACAAGATTTTATTCATCCATCACCAATAGCTAATTCGAACATTGTTGTGATTGAGGATCGTGTTTTTGAAGAATATGAAGAACCTCCTATCATTTCAAAGAGAGGAATATTCATAAACGGGATGAATGAGAAATGGATACAGTGTGATAAGTGCTCAGAATGGAGGAAGTTGGGATCTGTGGAGAATTTATCGGAACAGCGAAGGTGCTCATGTTCTGCTCCCATGAATTGA 861 0.4007 MASPIQIARPPVKRRRRKNISPRNLPKITDQELTQLSGDLNSTIVPLFEKTLSASDVGRLGRMVLPKPCVEAYFPPISEPGGIYLHIEDVKGKKLMFRFRFWPNNSSRIYVLEGVHPWILSMQLQAGDFVTFSRMDPGEILIIGFRKTSNSSTQVHEITLPKGMKREGMHLPQELVPEKKQKTCDIGSKSRRLVIDNQDALMLKLTWEEAQDFIHPSPIANSNIVVIEDRVFEEYEEPPIISKRGIFINGMNEKWIQCDKCSEWRKLGSVENLSEQRRCSCSAPMN* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2748 286 ProSiteProfiles Zinc finger CW-type profile. 249 286 IPR011124 GO:0008270
Psa3g2748 286 SUPERFAMILY DNA-binding pseudobarrel domain 45 148 IPR015300 -
Psa3g2748 286 CDD B3_DNA 46 147 IPR003340 GO:0003677
Psa3g2748 286 Pfam B3 DNA binding domain 48 145 IPR003340 GO:0003677
Psa3g2748 286 MobiDBLite consensus disorder prediction 1 27 - -
Psa3g2748 286 Gene3D - 26 153 IPR015300 -
Psa3g2748 286 SMART B3_2 48 149 IPR003340 GO:0003677
Psa3g2748 286 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 5 284 - -
Psa3g2748 286 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 5 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2748 Psa-Chr3 230570753 230573132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2748 1 284 B3 DNA Binding Superfamily AT4G32010 46.749 1.35e-92 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa3g2748 B3 1.9e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2748 - - mtr:MTR_7g073240 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2748 3 230570753 230573132 Psa3g2748 3 230570753 230573132 ECH