Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2724 ATGGAACTCTTCTCTCCCTCACATGATGAACAAGACGACAACACTTTTTCACTCTTCACTGGCTCCAATGAACTCGAAGGAGGTTTTCTTTCACTTGAGGAGATTGATGAAGCTGAGTATGGTTTAAATATTCCTGATCCTGAAAATCATGACAGGAAACACAATTCTAAACAGAACAAGAAGTTGAATAAGCAGAAGCAAGACAGTACTTGTAGTGATGGAGAAACGTTGAATGATGAGAGCATTAAGTCTAAAGTGAAGAAAAAGAAAAAGAAGAAAAGCAAGAATGCAAAAGAAAACCAGAAAGTTCAGCGGTTAAATGCTGATGCTGATGTGAAGGATGTTGTTGAGGAAGAGACCACTGATGAAACTGAATATTATGCATGGAACGAGTTGAGGCTTCATCCTCTTTTAATGAAAGCAATACACAAGTTAGGATTCAAGGAACCAACACCGATACAAAAAGCTTGTATTCCGGCTGCTGCTCATCAAGGGAAGGATGTTATTGGGGCTGCAGAGACAGGATCTGGTAAAACACTTGCATTTGGTTTGCCCATTTTGCAACGTCTTTTAGAGGAGCGTGAGAAGGCTTCAAATGTGGTTGATGAAAAGGGTGAAGAAGCTGAAAAATATGTTTCCACGGGCCTTTTAAGGAGTCTTATTATTGCTCCAACTAGAGAACTTGCACTTCAGGTCACCGATCATCTGAAAGCAGTAGCCCAGTATATTAATGTTAGGGTGACCCCTATAGTTGGAGGTATTTTAGCAGAAAAGCAGGAAAGACTTTTAAAAGCAAGGCCTGAGATTGTGGTTGGTACTCCAGGGAGGTTATGGGAACTTATGTCATCTGGAGAAAAGCATCTGGTTGAGTTACATTCACTGTCTTTCTTTGTGCTTGACGAGGCCGACCGAATGGTACAAAATGGTCATTTTAAGGAGTTGCAATCAATAATTGACATGCTTCCCATGTCCAATATCTCCAGTGAAGATAATTCTCAAGATGCACAAAGTTGTATTACAGTTTCTAGTGTCCAAAGAAAGAAAAGGCAAACTCTTGTTTTCTCTGCAACTGTCGCACTATCTGCTGATTTTCGCAAGAAGCTAAAGCGCAGTTCAATTCAGAAAAAGCAACTATCGACAGATGGTTTGGATTCTATTGAAACTCTTTCTGAGCGAGCGGGAATGAAACCCAATGCAGCAATTATTGATCTTACCAATCCATCAATATTAGCAGCCAAAATTGAGGAGTCATTTATTGAATGCACGGAAGATGATAAAGATGCCCATTTGTATTATATTCTCACTGTCCATGGACAAGGACGCACAATAGTTTTTTGTACGTCAATTGCAGCTCTGCGCCATATTTCTTCCATATTGCGTATTCTTGGCGTCAATGTTTGGACTCTTCATGCTCAAATGCAACAGCGAGCGCGTTTAAAGGCCATGGACCGCTTTCGTGAAAAGGAAAATGGCATACTTGTTGCCACAGATGTTGCTGCAAGAGGTCTTGATATTCCCGGTGTTAAAACTGTTGTCCATTATCAGCTTCCACATTCAGCTGAGGTTTATGTTCATAGAAGTGGAAGAACAGCTAGAGCTTCTGCTGAAGGTTGTAGCATTGCTTTAATCTCCCCAAAAGATACATCAAAGTTTGCTTCATTGTGCAAGTCATTTTCAAAGGATACCTTTCAGCGGTTTCCTTTGGAGAACTCGTACATGCCAGAGATTCTAAAACGATTGTCTCTTGCTCGTCAAATAGACAAGATAACAAGGAAAGATTCCCAGGAGAAGGCAGAGAAAAGCTGGTTTGATCGGAATGCTAGCTCAGTGGATTTAGTTACCGAAAATTATGACAGTGAGGAGGAACAAGTTAATAAACATAGGCAAAAGAAAGCCAGCTCTAAGAAATTGAAGAATTTGCACACGGAGCTCAGTATGCTGATTTCACGTCCTCTGCAATCAAAAACATTTTCACATCGATATTTAGCAGGGGCTGGTGTAACACCCCTCATGCAGGAACAATTGCAACAATTAGCAAGGCAAAAGTTAAGTGATCGCCAGGGTGCAGTATTCGGCAAAAAGGGAAAATTGGTTGTGATTGGTCAAGATTGTGTGGACGCACTTCACGCACTTCGGAGTGCTGGTGAAGAGGTGCGCATGGATATCAAGGATTCAACAGGAAGACAAAGAAACTCAGTGAGTTCTAAGAGAAAAAGGAAAGAGGAAAAGACACGTTTGTGTGATCAGCGTAAAAAGAAAAAGAGAGATCTAAACCAGGACGATGAATAG 2289 0.4093 MELFSPSHDEQDDNTFSLFTGSNELEGGFLSLEEIDEAEYGLNIPDPENHDRKHNSKQNKKLNKQKQDSTCSDGETLNDESIKSKVKKKKKKKSKNAKENQKVQRLNADADVKDVVEEETTDETEYYAWNELRLHPLLMKAIHKLGFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPILQRLLEEREKASNVVDEKGEEAEKYVSTGLLRSLIIAPTRELALQVTDHLKAVAQYINVRVTPIVGGILAEKQERLLKARPEIVVGTPGRLWELMSSGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNISSEDNSQDAQSCITVSSVQRKKRQTLVFSATVALSADFRKKLKRSSIQKKQLSTDGLDSIETLSERAGMKPNAAIIDLTNPSILAAKIEESFIECTEDDKDAHLYYILTVHGQGRTIVFCTSIAALRHISSILRILGVNVWTLHAQMQQRARLKAMDRFREKENGILVATDVAARGLDIPGVKTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDTFQRFPLENSYMPEILKRLSLARQIDKITRKDSQEKAEKSWFDRNASSVDLVTENYDSEEEQVNKHRQKKASSKKLKNLHTELSMLISRPLQSKTFSHRYLAGAGVTPLMQEQLQQLARQKLSDRQGAVFGKKGKLVVIGQDCVDALHALRSAGEEVRMDIKDSTGRQRNSVSSKRKRKEEKTRLCDQRKKKKRDLNQDDE* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2724 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 322 IPR027417 -
Psa3g2724 762 Coils Coil 89 109 - -
Psa3g2724 762 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 298 306 IPR000629 -
Psa3g2724 762 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 413 574 IPR001650 -
Psa3g2724 762 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 49 682 - -
Psa3g2724 762 MobiDBLite consensus disorder prediction 43 68 - -
Psa3g2724 762 Pfam Helicase conserved C-terminal domain 425 533 IPR001650 -
Psa3g2724 762 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 376 IPR014001 -
Psa3g2724 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 550 IPR027417 -
Psa3g2724 762 MobiDBLite consensus disorder prediction 40 106 - -
Psa3g2724 762 MobiDBLite consensus disorder prediction 721 762 - -
Psa3g2724 762 CDD DEADc_DDX24 138 403 - -
Psa3g2724 762 Coils Coil 187 207 - -
Psa3g2724 762 Gene3D - 411 651 IPR027417 -
Psa3g2724 762 Pfam DEAD/DEAH box helicase 151 359 IPR011545 GO:0003676|GO:0005524
Psa3g2724 762 Gene3D - 83 376 IPR027417 -
Psa3g2724 762 Coils Coil 610 630 - -
Psa3g2724 762 SMART ultradead3 146 386 IPR014001 -
Psa3g2724 762 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 127 155 IPR014014 GO:0003724
Psa3g2724 762 PANTHER RNA HELICASE 49 682 - -
Psa3g2724 762 SMART helicmild6 453 534 IPR001650 -
Psa3g2724 762 MobiDBLite consensus disorder prediction 735 762 - -
Psa3g2724 762 CDD SF2_C_DEAD 414 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2724 Psa-Chr3 228526876 228535242 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2724 119 559 Eukaryotic Initiation Factors Gene Family AT1G72730 25.991 2.82e-40 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2724 K14805 - gmx:100806018 1179.85