Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2720 ATGGAAGGGAGTGGGGACATGTTCAGAGGCTCTCCGGTTGCCGGATCATCATCATCAGCATCTTCTTCATCGATGAGTTCGAGAAGATACGGATTCCCGTCAGCAGCCAGCATAATTCAAGCACCGTTATCAGCGCTTCTGGAATATTCTGGTATTCTTCCCCCGAGGTCGAACCAGCACCAACCTAATCCCGATTCTGTCTCCAATGACGGTGAGGTTTCAATTAGGATCATCGGTGCTACTGAGCAAGATAATCGCAGGGAAGATGAGGCTACGCCACTGGTGGTCAACGTGAACGATGGTTCTGCGGCTGCGGCTGGGATGACGTCTTCCCCTTCACATGGCGATGGTGAGGGTGTTTCGAGGTCCGGGAGTGGAAATGTTGATGCAGAAGCAGGTGGTGGTGATGGCGTTGGTGCTAATGGAAGAGATTCTTCTTACCAGAGATATGATATTCAGCATGCTGCTAGGTGGATTGAACAAGTCTTGCCCTTTTCTTTGCTTCTTTTAGTGGTTTTCATTCGCCAACATTTGCAAGGGTTTTTCGTTACCATTTGGATTGCTGCTGTTCTTTTCAAGTCAAATGACATTATGCGGAAACAAACGGCCTTGAAGGGAGAGAGGAAAATGCCTGTTTTGATTGGAATTTCTGTTGCTTTTGCACTTCATGTGGTTGGTGTTTATTGGTGGTATCAGAATGATGATCTAATGTATCCATTAGTCATGCTTCCTCCCAAAGAAATACCGCCTTTCTGGCATGCTATTTTCATCATCATGGTGAATGATACTTTGGCGCGCCAGGCTGCAATGATATTCAAGTGTATATTGTTAATGTATTACAAGAATAGCAGAGGCCGCAATTATCGTAAGCAGGGGCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGAGCTTTATTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGTCTCTTTTCATCACTGATGACAGGGTTGTATTTAACATTTAAGCTCACATCTGTTGTTGAAAAGGTGCAATCTTTCTTTGCTTCAGTGAAGGCATTGTCACGTAAAGAAGTACACTATGGGGCTCATGCAACATCAGAGCAGGTTGTTGCAGCGGGTGATCTTTGTGCCATTTGTCAAGAGAAGATGCATGCCCCAATCTTACTTCGCTGTAAACACATTTTCTGCGAAGACTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTAAAACCTGCAGACCTCAGGTCATTTGGTGATGGCTCTACAAGTTTGTTTTTCCAGTTATTCTAA 1326 0.4502 MEGSGDMFRGSPVAGSSSSASSSSMSSRRYGFPSAASIIQAPLSALLEYSGILPPRSNQHQPNPDSVSNDGEVSIRIIGATEQDNRREDEATPLVVNVNDGSAAAAGMTSSPSHGDGEGVSRSGSGNVDAEAGGGDGVGANGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDIMRKQTALKGERKMPVLIGISVAFALHVVGVYWWYQNDDLMYPLVMLPPKEIPPFWHAIFIIMVNDTLARQAAMIFKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFASVKALSRKEVHYGAHATSEQVVAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2720 441 MobiDBLite consensus disorder prediction 1 30 - -
Psa3g2720 441 SMART ring_2 380 417 IPR001841 -
Psa3g2720 441 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 441 - -
Psa3g2720 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 354 428 IPR013083 -
Psa3g2720 441 SUPERFAMILY RING/U-box 371 423 - -
Psa3g2720 441 ProSitePatterns Zinc finger RING-type signature. 395 404 IPR017907 -
Psa3g2720 441 MobiDBLite consensus disorder prediction 105 120 - -
Psa3g2720 441 ProSiteProfiles Zinc finger RING-type profile. 380 418 IPR001841 -
Psa3g2720 441 MobiDBLite consensus disorder prediction 105 125 - -
Psa3g2720 441 MobiDBLite consensus disorder prediction 11 30 - -
Psa3g2720 441 Pfam Zinc finger, C3HC4 type (RING finger) 378 421 - -
Psa3g2720 441 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 16 441 IPR044235 GO:0061630|GO:1904294
Psa3g2720 441 CDD RING-HC_RNFT1_like 379 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2720 Psa-Chr3 228463409 228468433 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2720 3 441 C3H Transcription Factor Family AT5G01960 69.663 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2720 - K22379 gmx:100818546 649.047