Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2718 ATGGCTGCGAATTCTGAGAATATATTGTCCTTGCGGTCTAATTCAGAAGTTCATGGGGGCGCTGATTCCCTATGTATTCCACTGTGTTCTCTTTGCCACAAGGTCTTACCGCTTGATGATGGTGCGATAACAGGTGATCTTGCATTGGGTGGTGTATGCGGTGACTGCGCTGATTCTCTATGTGTTCCACTGTGTTCTCTTTGCCGCAAGGCCTTATCGCCGGATGATGAGATATCAGGTGATCTTGCAATGGGTGGTGTATGCGGTGACTGTAAATTTCTACTGCTTGAAGACTTTGGGAATCATACAGTTTCCCAAAGCTCTCAAAGGAGGCTGCGAGGAAGATTCAGGCAATCTAGCTCTGAATCGGTTCCGAATATTGGTGGACAAAACCATTCCACTGCATCTGTAGAGGAAGATCAACTTGTAGATGGTGACAATCCTGCATGGTCATTGCAGTATCCTAGTGCAAATACTACTCCTAGTCGTTCTAGAAGCTGGAGGCATGTTCTCTCGGATACTGAGAGTGAGGGTTTTGATAATTGGCGTTCTCATTATGGTGAAAATGAATCAAATGCGAGTTTTAGACAGTATATGGTTCCCCAAAGTGAGACTGATTCTTTTTCTTTCAGTGCTTATGGAGGTGACTCCGATATCTCTATGGATAGACAGAGTTTTGTAGGTACTGGAATTTTTAATTTACCAGACGAGGGAGATGAGTTTGATACTGACACTGACATCGATCCAATGCATGCTGGCCTCGGCCAATGGAACTCGGCCAATATGGAAGACGACGAAGAGGAGGGCGAGGAGGAAAGAGAATGGGAGCTACCCGAGGTCGATGACTCTGCATCCGCCCGCCTTCAAGTTCTTTTAAACTCAAGTCCAAATGAGGGCCAAAGCCGCATTAATTGGGAACAAAGGTTTAATGCCACTGAAACCGAGGGGATATTTAGCCAGATAATCAGGGAAACTTGGTTAGCTCTGGATGACGCTGAATTACCCGATGAAGCTAATTTTGGAGACTTCCTGGAAACCAGACGCTTCAATGATCTGCTTGATAATCTCGCGGACAATGACCCATCAAGACGAGGAGCACCTCCTGCTGCTGCATCTTTTGTAAACAATCTGCCTTGTGTAATCATTAGCAAGGAACACGAGAAACACGACGAACTAGTTTGTGCTATCTGCAAGGATGTTTTGGCCCTTGGAACTGAAGTAAATCAGCTCCCTTGTTCTCACCTTTACCATCGTCATTGCATTTTGCCGTGGTTGAGGACACGTAATTCATGCCCTCTTTGCCGTTACGAGCTTCCAACCGATGATAAGGATTACGAAGACAGAAAACAGAACAATAACGATGGTAGAAATGTGATCTACGAGAGACAGCAGCAACTACACGTTATGGACGATAGTTTCTCTGATATTTCTGATGGAGCTGAAGCGAGTGAAGTCGATGATACCACTACTCATCATGATGCCCTGAATTCTTCTACAATAGAAGGTAGTAGGGGAAGATGGCTGTTTCTTGCCGCAGCTCCGATTGTTAGTCTAGTTGGCATGGTTATTGTACTGTGGCTAGGTAGAAACTCTCGGAGTGAAGGGACTAGACATTCGAATACTCGCATGGCTGCGCAAAATCAGCAAACTTTTTATGGTTCTCGAAATCGAGGGGAGAGTAGACGCAGAAGATGGTGGTGTCCATTCTAA 1710 0.4538 MAANSENILSLRSNSEVHGGADSLCIPLCSLCHKVLPLDDGAITGDLALGGVCGDCADSLCVPLCSLCRKALSPDDEISGDLAMGGVCGDCKFLLLEDFGNHTVSQSSQRRLRGRFRQSSSESVPNIGGQNHSTASVEEDQLVDGDNPAWSLQYPSANTTPSRSRSWRHVLSDTESEGFDNWRSHYGENESNASFRQYMVPQSETDSFSFSAYGGDSDISMDRQSFVGTGIFNLPDEGDEFDTDTDIDPMHAGLGQWNSANMEDDEEEGEEEREWELPEVDDSASARLQVLLNSSPNEGQSRINWEQRFNATETEGIFSQIIRETWLALDDAELPDEANFGDFLETRRFNDLLDNLADNDPSRRGAPPAAASFVNNLPCVIISKEHEKHDELVCAICKDVLALGTEVNQLPCSHLYHRHCILPWLRTRNSCPLCRYELPTDDKDYEDRKQNNNDGRNVIYERQQQLHVMDDSFSDISDGAEASEVDDTTTHHDALNSSTIEGSRGRWLFLAAAPIVSLVGMVIVLWLGRNSRSEGTRHSNTRMAAQNQQTFYGSRNRGESRRRRWWCPF* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2718 569 MobiDBLite consensus disorder prediction 535 555 - -
Psa3g2718 569 MobiDBLite consensus disorder prediction 259 280 - -
Psa3g2718 569 MobiDBLite consensus disorder prediction 261 278 - -
Psa3g2718 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 356 441 IPR013083 -
Psa3g2718 569 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 335 462 - -
Psa3g2718 569 Pfam Ring finger domain 394 435 IPR001841 -
Psa3g2718 569 MobiDBLite consensus disorder prediction 110 135 - -
Psa3g2718 569 ProSiteProfiles Zinc finger RING-type profile. 394 435 IPR001841 -
Psa3g2718 569 SUPERFAMILY RING/U-box 374 441 - -
Psa3g2718 569 MobiDBLite consensus disorder prediction 535 556 - -
Psa3g2718 569 SMART ring_2 394 434 IPR001841 -
Psa3g2718 569 PANTHER OS06G0101300 PROTEIN 335 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2718 Psa-Chr3 228226047 228229178 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2718 57 569 C3H Transcription Factor Family AT5G01980 39.779 5.42e-100 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2718 - - mtr:MTR_7g074170 775.393