Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2675 ATGAGTCTGAACTCAACTGTCAGCAGCGGTAGCGGTGGTGGTGGTGGAAGCAGCGGAAGCCCTTGTGGAGCATGCAAGTTTTTGAGGAGGAAGTGTGTGCAAGATTGTGTTTTTGCTCCGTATTTCGATTCGGAGCATGGTACAACACACTTTGCAGCTGTGCACAAAGTGTTTGGGGCTAGCAATGTATCAAAACTTCTCCTTGGCCTTCCAGTTAACAGGAGGTTTGATGCTGCAATCTCTCTTTGCTATGAAGCTCAATCAAGGTTGAGAGATCCTGTCTATGGATGTGTTGGTCACATCTTTGCCCTCCAGCAACAGGTGATGACTTTACAAGCTGAGCTCTCCTACTTACAAAGCCACCTTAACTCAACAGAACCACCTCAACCACCATCTCAGGCGGCCACAGCGCCAATTATCTTCTCCTTCGCCGACCTACCACCGGCCACCGCGGCAACTATGCCGGCCACCTATGACATGTCTACACTGTTTGATCCAATGGGCCAGCCTGCATTGTCTGTGGAACAACAGAGGGCCAATATTGAGTCGGGTCAATATGTAGCTGCTCATGGCCCAATATCAACCACTAGTTCTGGGCTTCAATCAGTGGCATGTGACCTTTCTCACAGACAAGTTGGTTCTGCATCAGGATCATCCTCCAAAGCCTCATCATCTCCTCCCTTTTCCAAATTTTATAAATGA 702 0.4872 MSLNSTVSSGSGGGGGSSGSPCGACKFLRRKCVQDCVFAPYFDSEHGTTHFAAVHKVFGASNVSKLLLGLPVNRRFDAAISLCYEAQSRLRDPVYGCVGHIFALQQQVMTLQAELSYLQSHLNSTEPPQPPSQAATAPIIFSFADLPPATAATMPATYDMSTLFDPMGQPALSVEQQRANIESGQYVAAHGPISTTSSGLQSVACDLSHRQVGSASGSSSKASSSPPFSKFYK* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2675 233 MobiDBLite consensus disorder prediction 211 227 - -
Psa3g2675 233 ProSiteProfiles LOB domain profile. 20 122 IPR004883 -
Psa3g2675 233 PANTHER LOB DOMAIN CONTAINING PROTEIN 6 211 - -
Psa3g2675 233 MobiDBLite consensus disorder prediction 211 233 - -
Psa3g2675 233 Pfam Lateral organ boundaries (LOB) domain 21 119 IPR004883 -
Psa3g2675 233 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 6 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2675 Psa-Chr3 223811443 223814474 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2675 24 211 AS2 family AT2G45420 52.913 5.88e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa3g2675 LOB 9.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2675 K21994 - gmx:100777737 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2675 3 223811443 223814474 Psa4g4497 4 400308281 400310608 PCT