Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2651 ATGAGTTTCTTTCAGGGAATCATTGATTCCTTTAACTCTGTTTTCTCTCCTCAATCCCTCAATCCCAATTCTTCTTCTTCTTCTTCTCAAACCAATCTCACTGCAATGGAACCTTCTCCTTCTTCGATTTCCAACGAACGCGTCGCTTATAAGCTCAAAGGATACTTCGATTTGGCCACACAAGAGATCGATAAAGCTGTTAGGGCTGAAGAGTGGGTATTGATTGATGACGCTATTCTTCACTACAGGAATGCTCAAAGGATCCTTCTCGAAGCTAATTCAACTCCTGTTCCTTCGTTCATCACTTCCAGTGAGAAACAGAAGGTACAATCATATCGTCAAAAGATATCAAAATGGCAGGGACAAGTTTCTGAGAGATTGCAGGCTCTTAATAGACGGGCAGGCAGCTCATTTTCCAATCAGAGCACCTCAAACTCAAACGTTGCACAAACTGCTGCAATTCCATCTAAACTGTCAAATACTACAAAAAAAGTGTTACAAAAGAATCCTCAAAGAAAAGATGAGGTGAATAAAGTTCCAAGCCCAAAATCTAGTCAAACATCTGGTGCAAATTATGACACAAAACTGGTTGAAATGATTAACACTGCCATTGTAGACAGAAGTCCTTCTGTTCGATGGGATGATGTTGGTGGCCTTGAAAACGCAAAGCAAGCTTTAATGGAGATGGTGATTTTGCCAACTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGGCCAGCTAGAGGTTTGCTTCTCTTTGGTCCACCTGGTAATGGTAAGACCATGCTTGCCAAAGCAGTGGCATCGGAATCAGAAGCAACTTTTTTTAATGTCACCGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAGCTGAAAAGCTTGTAAGGACACTATTCATGGTGGCAACATCAAGACAACCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGACGGCAAATGAAAATGAGGCCAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACATCCAATCCTGATGATATTGTCATTGTAATTGGTGCGACCAATAAGCCCCAGGAACTGGATGATGCAGTTCTTCGAAGACTAGTTAAGAGAATATACGTACCTTTACCAAATGAAAATGTTCGGAAACTTCTGCTAAAACACAAACTCAAGGGTCAATCATTTTCTTTACCTAGTAGAGATCTAGAAATGCTTGTAAAAGAGACCGAAGGATACTCTGGAAGTGATTTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTTCAAACATTCTTACTGTCAAAGCAAATCAGGTAAGAGGACTGAGGTATGAGGATTTCAAGAAAGCAATGTCTGTCATTAGACCAAGTTTAAACAAAAGTAAATGGGAGGAGCTTGAGAAGTGGAACCAAGAGTTTGGCTCAAATTGA 1458 0.406 MSFFQGIIDSFNSVFSPQSLNPNSSSSSSQTNLTAMEPSPSSISNERVAYKLKGYFDLATQEIDKAVRAEEWVLIDDAILHYRNAQRILLEANSTPVPSFITSSEKQKVQSYRQKISKWQGQVSERLQALNRRAGSSFSNQSTSNSNVAQTAAIPSKLSNTTKKVLQKNPQRKDEVNKVPSPKSSQTSGANYDTKLVEMINTAIVDRSPSVRWDDVGGLENAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVTAASLTSKWVGEAEKLVRTLFMVATSRQPSVIFIDEIDSIMSTRTANENEASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPNENVRKLLLKHKLKGQSFSLPSRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGSNILTVKANQVRGLRYEDFKKAMSVIRPSLNKSKWEELEKWNQEFGSN* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2651 485 SMART smart 52 129 IPR007330 -
Psa3g2651 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 482 IPR027417 -
Psa3g2651 485 MobiDBLite consensus disorder prediction 134 166 - -
Psa3g2651 485 CDD AAA 217 380 - -
Psa3g2651 485 Gene3D - 209 479 IPR027417 -
Psa3g2651 485 Pfam Vps4 C terminal oligomerisation domain 451 483 IPR015415 -
Psa3g2651 485 Gene3D - 44 134 - -
Psa3g2651 485 Pfam ATPase family associated with various cellular activities (AAA) 250 380 IPR003959 GO:0005524|GO:0016887
Psa3g2651 485 Pfam AAA+ lid domain 405 436 IPR041569 -
Psa3g2651 485 PANTHER AAA DOMAIN-CONTAINING 4 485 - -
Psa3g2651 485 MobiDBLite consensus disorder prediction 134 192 - -
Psa3g2651 485 ProSitePatterns AAA-protein family signature. 352 371 IPR003960 GO:0005524|GO:0016887
Psa3g2651 485 CDD MIT_spastin 52 130 - -
Psa3g2651 485 Gene3D - 381 463 - -
Psa3g2651 485 SMART AAA_5 246 382 IPR003593 -
Psa3g2651 485 PANTHER BNAC04G50250D PROTEIN 4 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2651 Psa-Chr3 221765613 221772081 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2651 191 435 Calmodulin-binding Proteins AT3G56690 41.339 1.10e-48 178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2651 3 221765613 221772081 Psa3g2651 3 221765613 221772081 ECH