Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2641 ATGGGTAGAGGGAGAGTTGAGCTGAAGAGGATAGAAAACAAGATCAACCGTCAAGTTACTTTCTCTAAAAGAAGAAATGGTTTACTGAAGAAAGCCTATGAACTCTCAGTTCTATGTGATGCTGAAATCGCTCTTATCATTTTCTCAAGTCGTGGAAAACTCTCTGAATTTGGTAGCTCATCTTCTGGCATTGCAAAAACTCTGGAAAGATACCAGAAGTGTTCTTTTACTAGTCAAAATGATAATGATAATGTTAATGAACATGAAACTCAGAACTGGTACCAAGAGATGTCAAAGCTAAAGGCAAAGTATGAGTCTCTTCAAAAGGCACAAAGGCAACTGCTAGGGGAAGATCTTGGACCACTAAACATAAAAGAGCTACAAAACCTTGAGAAACAGCTTGAAGCAGCTTTAGCACAAGCTAGGCACAGGAAGACACAGATTATGATTGAACAAATGGAAGAGCTTAGGAAAAAGGAACTCCGCCTTGGCGACATAAATAAGCAACTTAGATTCAAGCTTGAATCAGATGGATTTAATCTTAAAGCTATTGAAAGCTTGTGGAGCTCTAGTAATTCTGCTGCTACTGTTGCTGCTGGAGGAGGCAACTTTCCTTTTCAGTCTTCTGAAACCAATCACATGGATTGCCAACCTGAACCTTTCTTGCAAATAGGGTACCAACACTATGTTCATGCTGAACCATCAAGTGCTCCAAAGAGCATGGTTGGTGAGAATAGTTTTATCCAAGGACAAGGATGGATCCTTTGA 768 0.3984 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLSEFGSSSSGIAKTLERYQKCSFTSQNDNDNVNEHETQNWYQEMSKLKAKYESLQKAQRQLLGEDLGPLNIKELQNLEKQLEAALAQARHRKTQIMIEQMEELRKKELRLGDINKQLRFKLESDGFNLKAIESLWSSSNSAATVAAGGGNFPFQSSETNHMDCQPEPFLQIGYQHYVHAEPSSAPKSMVGENSFIQGQGWIL* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2641 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa3g2641 255 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 239 - -
Psa3g2641 255 PANTHER MADS BOX PROTEIN 1 239 - -
Psa3g2641 255 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa3g2641 255 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa3g2641 255 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa3g2641 255 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Psa3g2641 255 Coils Coil 124 147 - -
Psa3g2641 255 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Psa3g2641 255 Coils Coil 90 117 - -
Psa3g2641 255 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa3g2641 255 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa3g2641 255 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Psa3g2641 255 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa3g2641 255 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Psa3g2641 255 Pfam K-box region 86 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2641 Psa-Chr3 220861265 220864788 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2641 1 255 MADS-box Gene Family AT2G45650 62.692 1.19e-106 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa3g2641 K-box 8.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2641 K09264 - tcc:18614251 342.043