Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2621 ATGGAGGAAGATGGTGTTGATGCAAGTTGTTCAACAGAAGATTGGTTGTTACATGTGAAGGAGCTTGTTCCTGTTGCTCTTGATAAAGCAAAAGAGGTTGTTAAGGTTAAAGGTTTTTCTGGTAGATGGAAGATGATCATATCTAGATTAGAACAGATTCCGTTGATGTTATCGAATTTATCGAGCCATCCGTGTTTCTCGAAGAATGCTCTTTGCAAGGAGCAGTTGCAGGCTGTGTCGAATTCGCTCAGAGACGTGGTTGAATCGGCTGAGTTGTGTTTGAAGGAGAAATATGAAGGTAAGCTTCAGATGCAGAGTGATCTGGACGCGTTGATTGGGAGAATGGATTTGAATTTACGAGATTGTGGACTTTTGATCAAAACTGGTATGCTCGGCGAGGCTACTTTGTCGTCGTCGTCCGTGTCTGGTTCTGTCGAACAATCAGATGCTGCAGCACATAACAACATAAGGGAGTTACTCGCACGCCTTCAGATTGGTCATTTGGAATCGAAGCACAAAGCTTTGGACTGTGTTGTTGAGGTTATGAAAGAAGATGAAAAGAATGTTTTGGATGTTTTGAGTAGGAGCAACATTGCTGCATTGGTTCAGTTGCTTACAGCATCATCAACAAGGATAAGAGAGAAAACAGTTACCGTTATATGCTCGCTCGTCGAATCGGGTAGCTGCGAGGATTGGCTAGTTTCCGAAGGTGTTCTTCCGCCTCTTATAAGGCTCGTTGAATCAGGCAGTGCTGTAGGTAGAGAAAAGGCCGCGATATCGCTGCAAAGGCTATCAATGTCGGCTGAAACATCACGTGAAATAGTCGGGCATGGAGGCGTTTGTCCGCTGATCGAGCTTTGTCGAACCGGAGATTCTGTTTCACAGGCTGCTGCAGCTTGTACATTAAAGAATATATCAGCTGTTCCTGAGGTGAGACAAGTTTTAGCCGAAGAAGGGATTGTTAAGGTTATGATCAATCTGTTAGCCTCAGGAATGTTGTTAGGTTCCAAAGAATACGCAGCAGAGTGTTTGCAGAATCTCACTGCAAGCAACGAAAGCCTAAAGAGAAGCGTCGTATCAGAAGGCGGTATCAGAACTCTTTTAGCCTATCTCGACGGTCCACTTCCTCAAGAATCCGCTGTCGCGGCGTTAAGAAATTTAGTCGGATCAATTTCTGACGAAACATTGGTTTCGTTAGGATTACTTCCACGGTTAGTTCACGTTCTAAAATCCGGCTCCTCGGGAGCGCAACAAGCCGCTGCATCAGCAATCTGCCGAGTTTGCAGCTCGAGCGAGAGGAAGAAATCAGTCGGCGAATCCGGTTGCATTCCCCTCCTTGTTAAGATGCTTGAAGCAAAACCAAACAGTGCAAGAGAAGTTGCTGCACAAGCATTATCATGCTTGATGACAGTGTCTTATAACAGAAGAGAAGTTAAGAAAGATGAAAAAAGTGTGCCTAATTTGGTTCAGTTGCTTGATCCTAGTCCACAAAACAATGCAAAAAAATACGCAGTTCTTTGCCTTGGATTGATTTCTTCAAGTAAGAAATGTAAGAAGCTAATGATCTCTTATGGTGCCATTGGATATTTGAAGAAACTGAATGAGATGGATATTCCAGGAGCTAAAAAGTTACATGAGAGATTAGAAAAAGGGAAATTAAGAAGTTTGTTTGGTAAGAAAATAGTGTAG 1689 0.4322 MEEDGVDASCSTEDWLLHVKELVPVALDKAKEVVKVKGFSGRWKMIISRLEQIPLMLSNLSSHPCFSKNALCKEQLQAVSNSLRDVVESAELCLKEKYEGKLQMQSDLDALIGRMDLNLRDCGLLIKTGMLGEATLSSSSVSGSVEQSDAAAHNNIRELLARLQIGHLESKHKALDCVVEVMKEDEKNVLDVLSRSNIAALVQLLTASSTRIREKTVTVICSLVESGSCEDWLVSEGVLPPLIRLVESGSAVGREKAAISLQRLSMSAETSREIVGHGGVCPLIELCRTGDSVSQAAAACTLKNISAVPEVRQVLAEEGIVKVMINLLASGMLLGSKEYAAECLQNLTASNESLKRSVVSEGGIRTLLAYLDGPLPQESAVAALRNLVGSISDETLVSLGLLPRLVHVLKSGSSGAQQAAASAICRVCSSSERKKSVGESGCIPLLVKMLEAKPNSAREVAAQALSCLMTVSYNRREVKKDEKSVPNLVQLLDPSPQNNAKKYAVLCLGLISSSKKCKKLMISYGAIGYLKKLNEMDIPGAKKLHERLEKGKLRSLFGKKIV* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2621 562 Gene3D - 155 252 IPR011989 -
Psa3g2621 562 Gene3D - 253 375 IPR011989 -
Psa3g2621 562 Gene3D - 376 456 IPR011989 -
Psa3g2621 562 SMART arm_5 430 470 IPR000225 GO:0005515
Psa3g2621 562 SMART arm_5 267 307 IPR000225 GO:0005515
Psa3g2621 562 SMART arm_5 308 349 IPR000225 GO:0005515
Psa3g2621 562 SMART arm_5 350 389 IPR000225 GO:0005515
Psa3g2621 562 SMART arm_5 390 429 IPR000225 GO:0005515
Psa3g2621 562 SMART arm_5 185 225 IPR000225 GO:0005515
Psa3g2621 562 SMART arm_5 472 513 IPR000225 GO:0005515
Psa3g2621 562 Pfam Armadillo/beta-catenin-like repeat 395 428 IPR000225 GO:0005515
Psa3g2621 562 Pfam Armadillo/beta-catenin-like repeat 272 307 IPR000225 GO:0005515
Psa3g2621 562 Gene3D - 457 543 IPR011989 -
Psa3g2621 562 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 9 560 - -
Psa3g2621 562 SUPERFAMILY ARM repeat 156 533 IPR016024 -
Psa3g2621 562 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 9 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2621 Psa-Chr3 219178271 219181779 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2621 165 466 U-box Gene Family AT3G54790 28.254 5.84e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2621 - - gmx:100789140 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2621 3 219178271 219181779 Psa4g4593 4 410257205 410261389 PCT