Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2612 ATGGATAATAGTAACTATGGTTCATCTTCCCCATATCGGTATCCAAACCCTTATATGTATCCCCCTAATCCGAACCCTAACCCTAACCCTAACCATAACCCTAATCATCATCCACCATATCCACCTCAAGGTTCAGTTCCTGATCCATTTGCACATGCTAATCCACCATATCCACCTCAAGGTCCAGTTCCTGATCCATATGCACATGCTCATGCTCATGCTCATGCTCCTCCTTATCCATATCCTTATGTTTCTTCACATTCCTTAAATTATTCATATCCTAGACCACCATCATTATCATCATCACCATCATTCAATTCTACTACCCCATATGAGTATCCATACCCTCCTCCTCATCATCCTCCTCATCATCAATTAGGACCCTCACCCTCAGCTCCACCCTCTTATCCTTCTTATCCCTACAATGTTTCTCCAGGGACTCATAATCCTCCTCAACCTTCCCATTCGCATCATGCTAGCTTATTACAACATGGATCATCCTCTCATCATTATTATTATCCACACAATGCTCCTCATGAAGAACGTCCTGATGTACATTCGCGTCATAATAGCTTCTCTGGTCCTTATTGGCATGACACATCAAGCTCAACAGCACTTGGTGGTGGTGGTGGTAGTGGAGTTTCGCAGGGTAGTGGTGGTGATAATCCGAAAGCTTCTAGTTATCCACGTTTGGAAGATCTAGTGAACAATGTTAAGTTGTCTGATAACCAACCGACTGCTCCTGCATCGCCTCCTGCTCCTGCTGCGCAACCTTTTATGCATTCAGTTTCGGTACCGAAGATTCCACAGAAGAAGGAGGATTTTTATGGACATTCTAATAACTCCTTTTCGGGTTGGGGATCCTCATACCCGAACCGGGTGAACTCGGGTAGACTTTCGGATTTTTCTGGCTCGTTTAATGACTCAATGCATAGTCAGAGCTTGCAGGTTGTTCCAGTGCAGAATAAAGGGTCCTTGAAAGTTTTGCTTCTTCATGGAAATTTAGATATATGGGTTCATGAAGCCAAAAATCTTCCAAATATGGACATGTTCCACAAAACATTGGGGGATATGTTTGGTAGATTACCTGGTAGTGTGAGCAATAAAATTGAAGGAACGATGAGTAAGAAGATTACAAGTGATCCTTATGTTTCAATTTCAGTTTCAAATGCTGTGATTGGAAGGACTTTTGTCATTAGCAACAGTGAAAATCCTGTTTGGACTCAACATTTCTATGTTCCTGTCGCGCATAATGCTGCTGAAGTGCACTTTGTTGTTAAAGATAGTGATGTTGTGGGTTCCCAACTCATTGGTATTGTGGCGATTCCAGTGGAACAAATATACTCAGGGGAACAAGTTGAAGGAACTTACCCTATTCTGAATAATAATGGGAAGCCTTGTAAGCAAGGTGCTGTACTGAGCCTATCCATTCAGTACATCCCAATGGAGCAACTGAGCTTTTATCATCAAGGAGTTGGAGCAGGGCCTGAATATATAGGTGTTCCTGCTACTTATTTTCCTTTGAGGAAAGGTGGAAATGTTACTCTATATCAAGATGCTCATGTTCCAGATGGTAGCCTCCCTAATGTGTTGCTTGATAGTGGCATGTTTTATGTGCATGGAAAGTGTTGGCATGACATATTTGATGCCATAAGTCAAGCTCGCCGCTTGGTTTATATTACAGGATGGTCGGTGTGGCATAAAGTTAGGTTGGTAAGAGAGGCAGGTTATGCATCAAATTATACATTGGGTGATCTTCTGAGGACAAAGTCACAGGAAGGAGTAAGAGTGCTTCTCCTTATTTGGGATGATCCTACATCAAGAAGTATTTTGGGTTATAAAACAGATGGTGTCATGGCAACTCATGATGAGGAAACTAGACGATTTTTCAAGCACTCATCAGTGAGTGTGCTGCTTTGTCCTCGCAGTGCTGGAAAACGCCATAGCTGGGTCAAGCAAAAGGAAGTTGGAACTATATATACGCATCATCAAAAAACTGTAATTGTGGATGGTGATGCTGGGAATAACAGAAGAAAAATTGTAGCATTTGTTGGCGGACTTGATTTATGTGATGGCCGATATGATACTCATCACCATCCTCTCTTTAAGACATTAGAAACAATACATAAGGATGACTATCACAACCCAACTTACACGGGTAACACGGGTGGTTGTCCAAGGGAGCCATGGCATGATTTGCATTCTAAAATTGATGGTCCGGCAGCTTATGATGTCTTAACTAACTTTGAGGAGCGCTGGTTAAAAGCTTCAAAACCGCAAGGGATAAAGAAGTTGAAAATTTCATATGATGACGCTTTGCTTAGACTGGAAAGAATTCCAGATGTTATTGGCATTAACGACACTCCTAGTGGTGACGATGATCCTGAATCATGGCATGTTCAGATATTTCGTTCAATTGATTCAAATTCAGTTAAGGGATTTCCAAAAGACCCAAGAGAGGCAACTGGCAAGAACCTTGTATGTGGGAAGAATGCGCTGATTGACATGAGCATACATACAGCATACGTGAAGGCTATTCGAGCTGCACAGCATTACATTTATATTGAGAATCAATATTTCATAGGGTCTTCTTACAATTGGAGTCAACATAAAGACCTTGGTGCTAATAATTTAATTCCGATGGAAATTGCTCTAAAGATTGCGGAAAAGATTAGAGCAAATGAGAGGTTTGCAGTTTATATAGTTATTCCAATGTGGCCAGAAGGTGTTCCAACAGGTGCTGCCACGCAAAGGATTCTATTCTGGCAGAATAAAACAATGCAAATGATGTATGAAACAATTTACAAGGCTTTAGTTGAGGCTGGGCTTGAAGCAGCATTCTCTCCACAAGACTATTTGAACTTTTTCTGTCTTGGTAATCGAGAGGCCATAAATATGTACGAAAAGATCAATGTATCAGGAAATCCTCCCCCAGCAAATAGTCCACAAGTATGTGACTAA 2961 0.414 MDNSNYGSSSPYRYPNPYMYPPNPNPNPNPNHNPNHHPPYPPQGSVPDPFAHANPPYPPQGPVPDPYAHAHAHAHAPPYPYPYVSSHSLNYSYPRPPSLSSSPSFNSTTPYEYPYPPPHHPPHHQLGPSPSAPPSYPSYPYNVSPGTHNPPQPSHSHHASLLQHGSSSHHYYYPHNAPHEERPDVHSRHNSFSGPYWHDTSSSTALGGGGGSGVSQGSGGDNPKASSYPRLEDLVNNVKLSDNQPTAPASPPAPAAQPFMHSVSVPKIPQKKEDFYGHSNNSFSGWGSSYPNRVNSGRLSDFSGSFNDSMHSQSLQVVPVQNKGSLKVLLLHGNLDIWVHEAKNLPNMDMFHKTLGDMFGRLPGSVSNKIEGTMSKKITSDPYVSISVSNAVIGRTFVISNSENPVWTQHFYVPVAHNAAEVHFVVKDSDVVGSQLIGIVAIPVEQIYSGEQVEGTYPILNNNGKPCKQGAVLSLSIQYIPMEQLSFYHQGVGAGPEYIGVPATYFPLRKGGNVTLYQDAHVPDGSLPNVLLDSGMFYVHGKCWHDIFDAISQARRLVYITGWSVWHKVRLVREAGYASNYTLGDLLRTKSQEGVRVLLLIWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVSVLLCPRSAGKRHSWVKQKEVGTIYTHHQKTVIVDGDAGNNRRKIVAFVGGLDLCDGRYDTHHHPLFKTLETIHKDDYHNPTYTGNTGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLKASKPQGIKKLKISYDDALLRLERIPDVIGINDTPSGDDDPESWHVQIFRSIDSNSVKGFPKDPREATGKNLVCGKNALIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWSQHKDLGANNLIPMEIALKIAEKIRANERFAVYIVIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYKALVEAGLEAAFSPQDYLNFFCLGNREAINMYEKINVSGNPPPANSPQVCD* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2612 986 MobiDBLite consensus disorder prediction 15 65 - -
Psa3g2612 986 MobiDBLite consensus disorder prediction 110 132 - -
Psa3g2612 986 SMART C2_3c 334 456 IPR000008 -
Psa3g2612 986 Gene3D C2 domain 328 472 IPR035892 -
Psa3g2612 986 SUPERFAMILY Phospholipase D/nuclease 826 934 - -
Psa3g2612 986 SUPERFAMILY Phospholipase D/nuclease 536 757 - -
Psa3g2612 986 MobiDBLite consensus disorder prediction 94 109 - -
Psa3g2612 986 CDD C2_plant_PLD 327 480 - -
Psa3g2612 986 Pfam C2 domain 333 459 IPR000008 -
Psa3g2612 986 MobiDBLite consensus disorder prediction 205 223 - -
Psa3g2612 986 PANTHER PHOSPHOLIPASE D 233 977 IPR015679 -
Psa3g2612 986 Pfam Phospholipase D Active site motif 659 693 IPR001736 GO:0003824
Psa3g2612 986 MobiDBLite consensus disorder prediction 94 132 - -
Psa3g2612 986 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 658 693 IPR001736 GO:0003824
Psa3g2612 986 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 331 481 IPR035892 -
Psa3g2612 986 PANTHER PHOSPHOLIPASE D ALPHA 1 233 977 - -
Psa3g2612 986 Gene3D Endonuclease Chain A 538 772 - -
Psa3g2612 986 ProSiteProfiles C2 domain profile. 311 457 IPR000008 -
Psa3g2612 986 Gene3D Endonuclease Chain A 807 962 - -
Psa3g2612 986 MobiDBLite consensus disorder prediction 1 71 - -
Psa3g2612 986 MobiDBLite consensus disorder prediction 205 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2612 Psa-Chr3 218286308 218291255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2612 374 983 Phospholipase D Gene Family (Wang group) AT4G00240 78.758 0.0 1012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2612 K01115 - gmx:100801286 1471.45