Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2608 ATGAGTTTTGATGAGAATAAGCCAGGTTGTGGTGAAAGTGGTAAAATCATATCAGAAGCAGATATTAATGCTTTTAGCAACGGAACAAACCATAGCAGCAGCAACAACATAACAATAATGCCTTCTGGTGCAATCTCACAACCTCGTTTATCAACTCCTACTTCTGTTAAATCCATGTTCAACTCACCTGGTCTATCTTTAGCACTTCAAACAAATAATGGTTTGAGAAGGAATAGAGAAGAAGAAGAAGAACATGAAAGCAGATCTGGTGGTAGTGAGAACATGGATGGTGTTTCTGGTGATGATTTTGATGCTGCCGACAATCCACCAAGGAAGAAACGTTATCACCGACACACTCCTCAACAAATTCAAGAACTTGAATCGATGTTTAAGGAGTGTCCTCATCCTGATGAAAAACAAAGACTTGAACTCAGCAAAAGGCTTTGTTTGGAAACAAGACAAGTAAAATTTTGGTTCCAAAATAGAAGAACACAAATGAAGACTCAATTAGAACGCCATGATAATTCGCTACTTCGGCAAGCAAACGATAAGCTAAGAGCTGAGAACATGTCAATAAGAGAAGCAATGAGGAATCCAATGTGTTCAAATTGCGGCGAACCAGCTATCATTAATGAAATATCACTCGAAGAACAACATCTAAGAATCGAAAACGCGAGATTAAAAGACGAACTCGACCGAGTTTGTACGCTTGCTGGCAAGTTTCTAGGCCGTCCGATTACGTCGTTACAAAACTCAAATTTAGACATCGGTTTCGTTGGTTTGAATAATAATACTTTGCCTTTGGAACAAGATTTTGGTATATCAATGGAGAGATCCATGGTAACAAATAGTAGCAATGGAAATGGTTTTGATAGATCAATGGAGAGATCTATGTTTCTTGAACTCGCTTTATCTGCAATGGATGAGTTAGTGAAAATGGCTCAAACTAAGGAGCCTCTTTGGATTAAAAGTGTTGAAAGTGGAAGAGAAATTCTTAACCATGAGGAATATTCAAGGACAGTTGGTTCTTCTTGCATTGGTTTGAAACCAAATGGTTTTGTTTCTGAGGCTTCTAGAGAAAGTGGTGTTGTTATCATAAACAGCCTGGCTCTTGTTGAAACTTTAATGGATTCAAATCGATGGTCAGAGATGTTCCCTTGTGTGATTGCAAAAGCTTCCACAAGTGAAGTTATATCTAATGGAATAAATGGAACTAGAAATGGTGCTCTTCAACTGATGCAAGGGGAACTTCAAGTACTTTCTCCATTGGTTCCAGTTCGTGAAGTGAATTTTCTACGTTTTTGCAAGCAACATGCAGAAGGGGTATGGGCAGTGGTTGATGTGTCCATAGATACCTTCAGAGAAACTTCTTCTGGCGGTGCACCCACTTTTCATAACTGTAGGAGACTTCCTTCTGGTTGTGTGGTTCAAGATATGCCTAATGGTTACTCTAAGGTGACATGGGTGGAGCATGCTGAATACGAAGAAAACGATGTTCACCAGCTCTACAAGCCCTTGCTAAGCTTAGGCATGGGGTTTGGCGCACAACGTTGGGTTGCAACCCTCCAACGCCAATGCGAATGTCTAGCCATCTTAATGTCATCAGCACTCCCCTCTCGAGAACACTCTGCAATAAGCGCGGGAGGAAGGCGAAGCATGCTAAAGCTAGCGCAACGAATGACAAACAACTTTTGCGCCGGAGTTTGTGCATCAACAATACATAAATGGAACAAGCTAAACGCAGGGAACGTGGGCGAAAACATTAGGGTTATGACACGGAAGAGTGTCAATGATCCAGGTGAGCCATCGGGGGTTGTGCTAAGCGCGGCAACCTCCGTTTGGCTACCAATTTCTCCCCTAAGAGTGTTTAATTTCCTTCGCAACGACGACCTCAGAAGCGAGTGGGACATACTCTCCAATGGCGCACCAATGCAAGAAATGGCTCACATTGCTAAAGGACATGACCATGGCAACAGTGTGTCCCTCCTAAGAGCTAGTGCTATTAATTCCAGCCAGAGTAGCATGCTGATTTTACAGGAGACTTGCACAGACGCGTCAGGGTCGCTTGTTGTGTACGCGCCGGTAGATATTCCCGCGATGCATTTGGTTATGAACGGCGGTGACTCCGCTTACGTCGCGTTACTTCCGTCAGGTTTCGCTGTGTTGCCAGATGGACGTATTAGCGGGGGTGATAATCACGGCGGCGCGTCGCAGCAGAGAGAGACGGGATCTCTTTTAACGGTTGCGTTTCAGATACTTGTGAATAGTCTTCCCACGGCGAAGCTGACGGTGGAATCAGTGGAGACGGTGAATAATCTTATTTCATGTACTATTCAGAAGATAAAAGCAGCACTTCAATGTGAGAGTTAA 2370 0.4316 MSFDENKPGCGESGKIISEADINAFSNGTNHSSSNNITIMPSGAISQPRLSTPTSVKSMFNSPGLSLALQTNNGLRRNREEEEEHESRSGGSENMDGVSGDDFDAADNPPRKKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHDNSLLRQANDKLRAENMSIREAMRNPMCSNCGEPAIINEISLEEQHLRIENARLKDELDRVCTLAGKFLGRPITSLQNSNLDIGFVGLNNNTLPLEQDFGISMERSMVTNSSNGNGFDRSMERSMFLELALSAMDELVKMAQTKEPLWIKSVESGREILNHEEYSRTVGSSCIGLKPNGFVSEASRESGVVIINSLALVETLMDSNRWSEMFPCVIAKASTSEVISNGINGTRNGALQLMQGELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTFRETSSGGAPTFHNCRRLPSGCVVQDMPNGYSKVTWVEHAEYEENDVHQLYKPLLSLGMGFGAQRWVATLQRQCECLAILMSSALPSREHSAISAGGRRSMLKLAQRMTNNFCAGVCASTIHKWNKLNAGNVGENIRVMTRKSVNDPGEPSGVVLSAATSVWLPISPLRVFNFLRNDDLRSEWDILSNGAPMQEMAHIAKGHDHGNSVSLLRASAINSSQSSMLILQETCTDASGSLVVYAPVDIPAMHLVMNGGDSAYVALLPSGFAVLPDGRISGGDNHGGASQQRETGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTIQKIKAALQCES* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2608 789 Coils Coil 210 230 - -
Psa3g2608 789 MobiDBLite consensus disorder prediction 42 74 - -
Psa3g2608 789 CDD homeodomain 111 169 IPR001356 GO:0003677
Psa3g2608 789 Coils Coil 178 198 - -
Psa3g2608 789 ProSiteProfiles 'Homeobox' domain profile. 109 169 IPR001356 GO:0003677
Psa3g2608 789 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 70 786 - -
Psa3g2608 789 MobiDBLite consensus disorder prediction 75 91 - -
Psa3g2608 789 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 70 786 IPR042160 -
Psa3g2608 789 SMART HOX_1 110 173 IPR001356 GO:0003677
Psa3g2608 789 SUPERFAMILY Bet v1-like 293 528 - -
Psa3g2608 789 Gene3D - 100 185 - -
Psa3g2608 789 SUPERFAMILY Bet v1-like 556 782 - -
Psa3g2608 789 MobiDBLite consensus disorder prediction 42 100 - -
Psa3g2608 789 ProSiteProfiles START domain profile. 292 531 IPR002913 GO:0008289
Psa3g2608 789 ProSitePatterns 'Homeobox' domain signature. 144 167 IPR017970 GO:0000981|GO:0006355
Psa3g2608 789 SUPERFAMILY Homeodomain-like 95 169 IPR009057 -
Psa3g2608 789 CDD START_ArGLABRA2_like 296 527 - -
Psa3g2608 789 Pfam Homeodomain 112 167 IPR001356 GO:0003677
Psa3g2608 789 SMART START_1 301 528 IPR002913 GO:0008289
Psa3g2608 789 Pfam START domain 301 528 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2608 Psa-Chr3 218039797 218044853 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2608 9 789 Homeobox Transcription Factor Family AT3G61150 62.271 0.0 998
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa3g2608 START 5.4e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2608 K09338 - gmx:100811873 1201.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2608 3 218039797 218044853 Psa3g2608 3 218039797 218044853 ECH