Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2606 ATGAATATGATGAGAAGGTTGAAAAGCATTGCTTCTGGGAGAACCTCTATTTCATCAGATCCTGGAGGTGATTCTACTACAAAAAGAGCCAAGTTCGATCAAGGGACTGAAGGAAAAGAAAACGAGGAAACAAATCGTGTTGAGGGAAGTGAAAATAATCGGGATAAGTATGTAGATGCGTCACAAGAAGATACGTCTAGTAAATGTAATACTACTGTTTCTGCGGTTTCTAAAACTGAGAAGTCGGGTTATGATCAGCTACCAAAAGAATTACTTGAAATGAAAATTAAAGATGATAAAAGCAAAAACAACAAAGAAAAGGACATGGAGGCAACTGTTGTGAACGGAAACGGAACGGAAACCGGTCAAATAATTACAACTTCTATTGGTGGTCGAGACGGACAACCAAAGCGGATAATCTCATACATGGCAGAACGTGTAGTTGGTACCGGTTCTTTTGGTGTTGTTTATCAGGCTAAGTGTGTTGAAACTGGTGAAGCCGTTGCGATTAAGAAAGTCTTACAAGACAAGAGATACAAAAATAGGGAACTCCAAGTTATGCGTATGCTTGAACATACTAATGTTCTTAAACTAAAGCATTGTTTCTACTCGACGGCTGAAAAAGAAGAGGTGTACCTTAACTTAGTGTTGGAGTATGTACCTGAAACTGTGTACAGAGTTTCAAAGCACTATGTCAGGATGCACCAACACATGCCTATACTCTACGTCCAACTATATACTTATCAGATATGCCGCGGTTTAAATTACATGCACCATGTGGTTGGAGTCTGTCACCGTGACATCAAACCTCAAAATCTATTGGTTAATCCGACGAGTCATCGGTTAAAGATATGTGATTTTGGGAGTGCGAAAATGTTGATGCCTGGTGAACCCAACATATCGTACATATGCTCGCGGTATTATAGAGCTCCTGAACTTATATTTGGCGCAACGGAGTACACAACTGCTATTGATGTTTGGTCTGCTGGCTGTGTTTTGGCTGAGCTTCTTCTAGGACAGCCATTGTTTCCTGGAGAGAGTGGGGTTGATCAGTTGGTAGAGATCATTAAGATCTTGGGAACACCGACCCGAGAAGAAATAAAGTGCATGAATCCAAATTACACTGAATTCAAATTTCCTCAGATTAAAGCTCACCCATGGCACAAGATCTTTCACAAAAGTATGCCATCTGAAGCTGTGGATCTTGTATCGAGGATGCTTCAGTATTCGCCAAATCTACGTTGCACTGCTTTGGATGCATGTGCACATTCCTTCTTTGACGATCTTCGGGACCCAAATGTACGATTACCAAATGGGCAAGAACTTCCTCCTTTGTTCGATTTCACAGCTCAAGAGTTGGCAGGCGCACCCGATGAGTTACGTCGGCGTCTCATTCCTGAGCATGCAAGGAGTTGA 1416 0.4167 MNMMRRLKSIASGRTSISSDPGGDSTTKRAKFDQGTEGKENEETNRVEGSENNRDKYVDASQEDTSSKCNTTVSAVSKTEKSGYDQLPKELLEMKIKDDKSKNNKEKDMEATVVNGNGTETGQIITTSIGGRDGQPKRIISYMAERVVGTGSFGVVYQAKCVETGEAVAIKKVLQDKRYKNRELQVMRMLEHTNVLKLKHCFYSTAEKEEVYLNLVLEYVPETVYRVSKHYVRMHQHMPILYVQLYTYQICRGLNYMHHVVGVCHRDIKPQNLLVNPTSHRLKICDFGSAKMLMPGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKSMPSEAVDLVSRMLQYSPNLRCTALDACAHSFFDDLRDPNVRLPNGQELPPLFDFTAQELAGAPDELRRRLIPEHARS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2606 471 ProSitePatterns Protein kinases ATP-binding region signature. 148 172 IPR017441 GO:0005524
Psa3g2606 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Psa3g2606 471 SUPERFAMILY Protein kinase-like (PK-like) 141 451 IPR011009 -
Psa3g2606 471 Pfam Protein kinase domain 142 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2606 471 PANTHER SHAGGY-LIKE KINASE 6 471 - -
Psa3g2606 471 SMART serkin_6 142 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2606 471 Gene3D Transferase(Phosphotransferase) domain 1 222 470 - -
Psa3g2606 471 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 6 471 - -
Psa3g2606 471 MobiDBLite consensus disorder prediction 9 25 - -
Psa3g2606 471 MobiDBLite consensus disorder prediction 1 74 - -
Psa3g2606 471 ProSiteProfiles Protein kinase domain profile. 142 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2606 471 Gene3D Phosphorylase Kinase; domain 1 127 221 - -
Psa3g2606 471 CDD STKc_GSK3 140 429 IPR039192 -
Psa3g2606 471 MobiDBLite consensus disorder prediction 26 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2606 Psa-Chr3 218028265 218035437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2606 148 429 Core Cell Cycle Gene Families AT1G76540 35.906 1.24e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Psa3g2606 Pkinase 3.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2606 K00924 - gmx:100786458 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2606 3 218028265 218035437 Psa3g2606 3 218028265 218035437 ECH