Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2604 ATGAACTCATCAACCCCAACACCTTCTCCTCCACCGGATTCCACCTCCGGCGACACCGAACCATTCCTCCTCCGTACTCGCCGCTCCCTCAACCGCGCACCTCCTCCACCACTCCGTACCGCCGCTCGTTTCTTCCGTCGAGCTAGCTCCGAGCGTATGATGCTCCGTGAACCATCGTTGCGTGTCCGAGAGAGGGCGGCGGCGGAGGTGGAAGAGCGGCAGAGTGAGTGGGCTTACTCGAAACCGGTGGTGACAATTGACGTGGCGTGGAACTTGTCGTTCCTCGTGGTTAGTGCTGTTGTTTTGTGTGGTAGTAGGAATGAGGAGCCTTGTGTGCCTCTCAGGGTGTGGATTTTGGGTTACTTGTTGCAGGGATTGGTACATTCTTTATTTGTTGTTTTGGAATTCAGAAGAAGGAGGAGGAATAACCATTTTGAAGATTCTTCTTCTTGGAGTTTCAGTTCTGAGAGTGATTCTGATGTTGCTTCAGAGCAGTTTTTGGAGTATCAGGAAAATAGTATCTTCAAGTACATAGAGTCGGTAAATACCGTTCTTTCATTTTTATGGTGGATTCTTGGATTCTACTGGGTAACTGCTGGTGGTCAGAGTTTGACAAGGGATTCACCTCAGCTCTATTGGCTCTGTATCACATTTCTTGCTTTCGACGTTGTGATTGTTGTGATCTGTGTTACTGCTGCGTGTCTCATTGGAATTGCTGTTTGCTGTTTTCTTCCATGCATACTTGCTATTTTGTATGCAGTGACTGATCAGGAACAGGAAGGGGCAACAAAGGAAGAGATTGACCTGTTGCCAAAATATAACTTCAGAATAATAAAGGAATTTAAGAAAGAAGGTGATGCCCAAGAATCATCCAGAGGAGTGATGATGGAATGCGACAGCGATTCAGCTTCTGAGCATATTATTGCCTTAGAAGATGCAGAATGTTGTATATGTCTTTCGGCCTATGATGATGGAACCGAACTTAGAGAACTTCCTTGCAACCACCATTTTCATTGCACATGCATTGACAAATGGCTGCTCATCAATGCAACCTGCCCTCTCTGCAAGTTTAACATTTTGAGCACTGATAACCTCCAAGTTTGA 1104 0.462 MNSSTPTPSPPPDSTSGDTEPFLLRTRRSLNRAPPPPLRTAARFFRRASSERMMLREPSLRVRERAAAEVEERQSEWAYSKPVVTIDVAWNLSFLVVSAVVLCGSRNEEPCVPLRVWILGYLLQGLVHSLFVVLEFRRRRRNNHFEDSSSWSFSSESDSDVASEQFLEYQENSIFKYIESVNTVLSFLWWILGFYWVTAGGQSLTRDSPQLYWLCITFLAFDVVIVVICVTAACLIGIAVCCFLPCILAILYAVTDQEQEGATKEEIDLLPKYNFRIIKEFKKEGDAQESSRGVMMECDSDSASEHIIALEDAECCICLSAYDDGTELRELPCNHHFHCTCIDKWLLINATCPLCKFNILSTDNLQV* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2604 367 MobiDBLite consensus disorder prediction 1 15 - -
Psa3g2604 367 Pfam Ring finger domain 314 356 IPR001841 -
Psa3g2604 367 ProSiteProfiles Zinc finger RING-type profile. 315 356 IPR001841 -
Psa3g2604 367 CDD RING-H2_RNF111_like 314 358 - -
Psa3g2604 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 364 IPR013083 -
Psa3g2604 367 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 364 - -
Psa3g2604 367 SUPERFAMILY RING/U-box 305 362 - -
Psa3g2604 367 SMART ring_2 315 355 IPR001841 -
Psa3g2604 367 MobiDBLite consensus disorder prediction 1 34 - -
Psa3g2604 367 PANTHER TARGET OF ERK KINASE MPK-1 7 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2604 Psa-Chr3 218015142 218018747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2604 12 363 C3H Transcription Factor Family AT1G68070 47.059 1.79e-108 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2604 - - gmx:100795425 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2604 3 218015142 218018747 Psa3g2604 3 218015142 218018747 ECH