Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2602 ATGGGTGTTGGTGGTAATTTCTGGGATTTGTTGAAGCCCTATGCGCGCAATGAAGGTTTTGATTTCTTGAGAAACAAGCGAGTTGCTGTTGACCTTTCCTTCTGGATTGTTCAGCATAACAATGCCATCAAAACGCATGTCAAGAAACCTCACCTCAGACTCACTTTCTTCCGTACGATTAATCTCTTTTCAAAGTTTGGAGCATTTCCTGTGTTCGTTGTTGATGGGACTCCATCGCCGTTGAAGTCAAAGGCCAGGAGTGCTAGATTTTTCCGTTCTTCTGGAATTGAATCGACTAGCTTGCCAGTTTCTGAAGGTGTTTCAGCTGAGAGAAACCGTTCATTTTCAAGATGTGTTCAAGAGTGTGTGGAACTTGCTGAGCTACTCGGGATTCCTGTACTAAAAGCTAAAGGAGAGGCTGAAGCACTCTGTGCCCAATTAAATAGTGAAGGTTATGTAGATGCGTGCATCACATCTGACAGTGATGCATTCCTCTTTGGGGCCAAATGCGTTATAAAATCTTTCTCTCCCAATTCCAAAGAACCATTTGAATGCTACAATGTGTCAGAGATTGAGGCCGGGCTTGGATTGAAGAGGAAACACCTAATAGCCATTGCTCTTTTGGTTGGAAATGATCATGATACGAGCGGTGTTCAAGGGATTGGACTTGATAGCGCTCTTCGTTTTGTTCAAGCGTTTAGTGAAGATGATGTATTGAATAGATTACATGAGATAGGCAAAGGGAATGCTTTTCAAGTTCCTATCGACGTTAAATCTGAGGACAATATGGATACTGATGGGAACTCCCCAAGTTCAAAACAACCTCACTGCTCATTCTGTGGTCATCCAGGCAACAAAAGAGATCATTCGAAGTCTTCATGTGAATTTTGTGTCACAGATGACAATGAAGGTTGCTTGAAAAAAGCAGAAGGTTTTAAATGTGATTGTAACTCTTGTGGTATGAATAGGAAAAATAAGGAGCAGAAAAAGATTGAAAATTGGCACACAAAAATTTGTGACAAGATTGCGAAGGAGCCGAATTTTCCAAACAATGAAATCATTGCTATGTATTTATGCAATGACAATGGTTACTTTTCCGCAATTGACGGCCCTAAGATCTCATGGGAAAGACCGAAAATTGAGCTTCTGATAGATTTTTTGAACTTCCATCAGAACTGGGATCCGTCGTACATTCGGCGGATAATGTTTCCTATGATGTCCACCATCTTCTTGAGAGAAATGGCTACCGCCACGACAGATAGTTTGTTATTTGGACAGTTTGAGTTTAATTCTTTAAAACGCGTGAAGACGAGATACGGATATCAGATTTATGTCGTCAAGTGGAAACGCGCGATGGGAAACATTGCCTCCAAAACTCTTTCAAGTCAATCTGGCACGCAAGAGGATGTTATAGAGGTTGATGACGACACAGTTGATCTACTCGATGATTGTGATTCTCCCGTGATTTGCGAAGAAGATGGATGTAGTTTTCTGTTGACAGATGAAAATATGGACCTTGTTGGAGCTGCTTATCCAGAAGAAGTGAAAAGGTTTTGGCATGAGCAGGAACTGAAGGACGCGAAAAGGAAAAAGAATCAAACTTCAAAATCTCAAGAAAATGAAAAGTCAGCAACATCACCAAACTCGAAAGGTGTCCAGCTAAATATCACCGAGTTCTTCCCAACAACCAAAAGCAAGCATAATTCAAAACACGGAGAAGAGTCATCATCGAGAAAAAGTGATAGCCCGGACAGCGGAGGCTCAAAAGTGAAGCGGAAATCGTCAAGTCCTAATATTCCGAAATCTGTTAGGCGTCGCCTTTTGTTCGAGTAG 1833 0.4152 MGVGGNFWDLLKPYARNEGFDFLRNKRVAVDLSFWIVQHNNAIKTHVKKPHLRLTFFRTINLFSKFGAFPVFVVDGTPSPLKSKARSARFFRSSGIESTSLPVSEGVSAERNRSFSRCVQECVELAELLGIPVLKAKGEAEALCAQLNSEGYVDACITSDSDAFLFGAKCVIKSFSPNSKEPFECYNVSEIEAGLGLKRKHLIAIALLVGNDHDTSGVQGIGLDSALRFVQAFSEDDVLNRLHEIGKGNAFQVPIDVKSEDNMDTDGNSPSSKQPHCSFCGHPGNKRDHSKSSCEFCVTDDNEGCLKKAEGFKCDCNSCGMNRKNKEQKKIENWHTKICDKIAKEPNFPNNEIIAMYLCNDNGYFSAIDGPKISWERPKIELLIDFLNFHQNWDPSYIRRIMFPMMSTIFLREMATATTDSLLFGQFEFNSLKRVKTRYGYQIYVVKWKRAMGNIASKTLSSQSGTQEDVIEVDDDTVDLLDDCDSPVICEEDGCSFLLTDENMDLVGAAYPEEVKRFWHEQELKDAKRKKNQTSKSQENEKSATSPNSKGVQLNITEFFPTTKSKHNSKHGEESSSRKSDSPDSGGSKVKRKSSSPNIPKSVRRRLLFE* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2602 610 MobiDBLite consensus disorder prediction 524 610 - -
Psa3g2602 610 MobiDBLite consensus disorder prediction 564 588 - -
Psa3g2602 610 Pfam XPG I-region 130 212 IPR006086 GO:0004518
Psa3g2602 610 Coils Coil 521 541 - -
Psa3g2602 610 SMART xpgineu 127 197 IPR006086 GO:0004518
Psa3g2602 610 Gene3D - 197 258 - -
Psa3g2602 610 PANTHER FLAP ENDONUCLEASE GEN-LIKE 1 1 597 - -
Psa3g2602 610 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 197 414 IPR036279 -
Psa3g2602 610 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 597 IPR006084 -
Psa3g2602 610 SMART xpgn3 1 96 IPR006085 GO:0004518
Psa3g2602 610 Gene3D - 3 196 - -
Psa3g2602 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Psa3g2602 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Psa3g2602 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 126 143 IPR006084 -
Psa3g2602 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 147 167 IPR006084 -
Psa3g2602 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 202 217 IPR006084 -
Psa3g2602 610 MobiDBLite consensus disorder prediction 538 563 - -
Psa3g2602 610 SUPERFAMILY PIN domain-like 6 212 IPR029060 -
Psa3g2602 610 CDD PIN_GEN1 2 201 - -
Psa3g2602 610 Pfam XPG N-terminal domain 1 93 IPR006085 GO:0004518
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2602 16 254 Core DNA Replication Machinery Family AT5G26680 28.077 4.93e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2602 K15338 - gmx:100791251 891.723