Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2565 ATGTCATTCACTGGAACTCTTGATAAATGTGCAGCTTGTGATAAAACTGTTTATGTGGTTGATTTGTTAACTCTTGAAGGTATACCTTACCATAAAAGTTGCTTCAAATGCAGTCACTGCAAGGGAAATCTTACGATGAGCACCTACTCATCAATGGATGGTGTCCTCTATTGTAAGACACATTTTGAACAGCTTTTCAAGGAATCAGGAAATTTCAGCAAGAACTTCCAGAATGCAAAGGCTACTGAGAAACAAAATGAGTCTGTGAATAGGGCACCCACCAGAATGTCCTCTATGTTCAGTGGGACTCTAGACAAATGCTCAGTTTGCACAAAAACAGTCTATCCTTTGGAAAAGATGTCATTGGAAGGAGAATGCTACCACAAGAACTGCTTTAGGTGTGCTCATGCAGGGTGCCACCTTACACATTCATCCTATGCTGCCCTAGATGGTGTTCTCTATTGCAGGCACCATTTTCAACAGCTTTTCATGGAGAAAGGAAACTACAATCATGTGCTTCAAGCAGCTGCAAACAGGAAGAATGCAACTCCACCTCCTGAACCAGCTGAACCAGCTGAGGATGATGATGGTGTTGAACCATCAAAGACGGCTGATGATGATGATGAACCATCAAAGCCAGAAGAAGAAACTGAGGAAAAGACAGAAGAAACACCTGAAGCTTGA 684 0.4211 MSFTGTLDKCAACDKTVYVVDLLTLEGIPYHKSCFKCSHCKGNLTMSTYSSMDGVLYCKTHFEQLFKESGNFSKNFQNAKATEKQNESVNRAPTRMSSMFSGTLDKCSVCTKTVYPLEKMSLEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCRHHFQQLFMEKGNYNHVLQAAANRKNATPPPEPAEPAEDDDGVEPSKTADDDDEPSKPEEETEEKTEETPEA* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2565 227 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 99 132 - -
Psa3g2565 227 MobiDBLite consensus disorder prediction 178 227 - -
Psa3g2565 227 PANTHER OS06G0237300 PROTEIN 1 197 IPR045268 GO:0051015
Psa3g2565 227 MobiDBLite consensus disorder prediction 189 227 - -
Psa3g2565 227 Pfam LIM domain 107 162 IPR001781 -
Psa3g2565 227 Pfam LIM domain 10 65 IPR001781 -
Psa3g2565 227 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 133 172 - -
Psa3g2565 227 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Psa3g2565 227 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Psa3g2565 227 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Psa3g2565 227 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Psa3g2565 227 ProSiteProfiles LIM domain profile. 105 165 IPR001781 -
Psa3g2565 227 SMART lim_4 106 158 IPR001781 -
Psa3g2565 227 SMART lim_4 9 61 IPR001781 -
Psa3g2565 227 Gene3D Cysteine Rich Protein 5 103 - -
Psa3g2565 227 Gene3D Cysteine Rich Protein 104 171 - -
Psa3g2565 227 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2565 Psa-Chr3 216175545 216177294 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Psa3g2565 LIM 1.9e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2565 - K09377 gmx:100779513 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2565 3 216175545 216177294 Psa3g2565 3 216175545 216177294 ECH
Psa3g2565 3 216175545 216177294 Psa4g3568 4 301009636 301012336 PCT