Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2559 ATGGGAAGGACACCATGCTGTGACAAGAAGGGTTTGAAGAAAGGACCTTGGACTGCTGAAGAAGATGAAATTCTTGCTAACTATATCAACAAAAATGGTGGTCATGGAAGCTGGCGTTCTCTCCCTAAGATCACAGGTCTTCTTCGTTGTGGTAAGAGTTGCAGGCTTAGGTGGACCAACTATTTGAGACCGGACATTAAACGCGGACCCTTTACTCCCGAGGAAGAAAAACTAGTCATACAGCTTCATGCCATTCTAGGAAATAGGTGGGCTGCAATTGCATCTCAGTTACCAGGAAGAACAGACAACGAGATAAAGAACTTTTGGAACACGCATTTGAAGAAGCGTCTCAAAAGCATGGGGATTGATCCAAAAACACATGAGCCAGTAGCCTCGTCAACTAGTTACCCCAATCACAAGTCACACGCATCGATTTTGACACGTCACATGGCTCAATGGGAGAGTGCAAGGCTTGAAGCAGAAGCAAGACTCTCAACTGAATCATCACACTTCAACAACAGCAACAACAACAACAACAACAATCATAATTCTTCTGAAAAAACTGATTCTTCTTCTGACTACTTTCTCCGAATATGGAACTCTGAAGTTGGAGATGCATTTCGCAATGTTCAAAAACCAGATACAGATCATGATACCAAAATGAGTCGCTGTCAGAGTCCTATCTCTGCTGTCACAGCAAGCAGTAGTGTGAAAGAAGAGTCGGAGTGGAAAACTGACAAGTTTTGCGCTGAAGATGTGATTCTTGAATCCGATTCAACAAGCTCTAATGACTTGGAAGATTCATCAGACACTGCTTTGCAGCTCTTGTTCGATTTTCCTATGAACAATGATATGAGCTTCTTAGAAAACTATTTTGCTTAA 882 0.4229 MGRTPCCDKKGLKKGPWTAEEDEILANYINKNGGHGSWRSLPKITGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNFWNTHLKKRLKSMGIDPKTHEPVASSTSYPNHKSHASILTRHMAQWESARLEAEARLSTESSHFNNSNNNNNNNHNSSEKTDSSSDYFLRIWNSEVGDAFRNVQKPDTDHDTKMSRCQSPISAVTASSSVKEESEWKTDKFCAEDVILESDSTSSNDLEDSSDTALQLLFDFPMNNDMSFLENYFA* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2559 293 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Psa3g2559 293 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Psa3g2559 293 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Psa3g2559 293 PANTHER TRANSCRIPTION FACTOR MYB104-RELATED 1 289 - -
Psa3g2559 293 Gene3D - 70 143 - -
Psa3g2559 293 MobiDBLite consensus disorder prediction 128 142 - -
Psa3g2559 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Psa3g2559 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Psa3g2559 293 MobiDBLite consensus disorder prediction 165 187 - -
Psa3g2559 293 MobiDBLite consensus disorder prediction 122 142 - -
Psa3g2559 293 CDD SANT 16 62 IPR001005 -
Psa3g2559 293 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Psa3g2559 293 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Psa3g2559 293 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 289 - -
Psa3g2559 293 SMART sant 67 115 IPR001005 -
Psa3g2559 293 SMART sant 13 64 IPR001005 -
Psa3g2559 293 CDD SANT 70 113 IPR001005 -
Psa3g2559 293 Gene3D - 11 68 - -
Psa3g2559 293 MobiDBLite consensus disorder prediction 164 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2559 Psa-Chr3 215793833 215795409 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2559 1 289 MYB Transcription Factor Family AT3G61250 63.729 8.32e-120 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa3g2559 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2559 K09422 - gmx:100816569 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2559 3 215793833 215795409 Psa4g4656 4 412888399 412891023 PCT