Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2557 ATGAACAATAGAGCGAGATATCCACTTGGGAATGGGTTAGGTCGAGGTGGTGGTGGTGGAGGGTTTCAACAGAGACCAAATCAACAACAGTATGTGCAGAGGCACATGATGCAAAATCAGCATCCACAACAACAATACCAGCAGCATCAACAGAATCAACAATATCAGCAGCAGCAGCAACAACAACAGTGGCTGAGAAGGAACCAGTTGAGTGGAACTGACACCAGTGTTGTGGAGGAGGTCGAGAAGACTGTGCAGTCTGAAACAAACGACTCTAGTTCACCAAGATTGAAGGCAAGACTAAAGATTCCACCAGCTGATACACGCTATAGGACAGAGGATTTCAAAGATAGATATCTTCGTAAGCCGTATATCATTAATCTTATGGACGAGCTAACTCTGAAGGGTATTACCCAATTTTATGCATTTGTGGAGGAGAGGCAGAAAGTTCACTGCCTAAATACTCTTTTCTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAATTCGGTTAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTAGGGTATTCATGTTTCTATATTCATGCTAAGATGTTGCAAGACCACCGTAATAGAGTTTTTCACGACTTCCGCAATGGTGCCTGCAGAAATCTTGTTTGTACTGATCTTTTCACTAGGGGAATAGATATCCAAGCAGTGAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCGGAGACATATCTGCACAGGGTTGGCCGATCAGGGAGGTTTGGACACCTTGGTTTAGCAGTGAACTTAATAACCTATGAGGATCGTTTCAATTTGTATAGGATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCCCCATTCATTGATCAGGCCATATATTGTCGGTGA 900 0.4189 MNNRARYPLGNGLGRGGGGGGFQQRPNQQQYVQRHMMQNQHPQQQYQQHQQNQQYQQQQQQQQWLRRNQLSGTDTSVVEEVEKTVQSETNDSSSPRLKARLKIPPADTRYRTEDFKDRYLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYCR* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2557 299 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 114 299 - -
Psa3g2557 299 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 33 114 - -
Psa3g2557 299 CDD SF2_C_DEAD 137 266 - -
Psa3g2557 299 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 136 296 IPR001650 -
Psa3g2557 299 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 33 114 - -
Psa3g2557 299 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 114 299 - -
Psa3g2557 299 SUPERFAMILY beta-sandwich domain of Sec23/24 23 72 - -
Psa3g2557 299 Gene3D - 130 298 IPR027417 -
Psa3g2557 299 SMART helicmild6 176 257 IPR001650 -
Psa3g2557 299 MobiDBLite consensus disorder prediction 1 22 - -
Psa3g2557 299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 294 IPR027417 -
Psa3g2557 299 MobiDBLite consensus disorder prediction 34 54 - -
Psa3g2557 299 Pfam Helicase conserved C-terminal domain 151 257 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2557 Psa-Chr3 215772002 215778177 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2557 114 289 Eukaryotic Initiation Factors Gene Family AT3G19760 40.449 1.12e-41 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2557 K12614 - han:110937653 382.104