Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2551 ATGGATCACGCGGACCATATGGGGTTGTCCGGTTCCGCATCTTACTATATGCAGCAGAGAGGACTTGCTGGTTCTGGAGCACAACCTGAGTTACATGTTTCGTCGAGTTTTAGTCATCTGTCTAATCCCAATCTACCATTTCAATCCAGCATTGGTGGTGGCACTAACATTGGATCAACATTACCTTTAGAGTCTTCAGCAATTTCATCTCAAGGCGTCAATGTGAGTGGTCCTACCGGGGTACAGTCTGGGGAGACTGTAAAAAGGAAGAGAGGAAGACCGAGAAAGTATGGCTCTGATAGAGTTGTGTCATTGGCACTAAGTCCAAGTCCAACACCGTCTAGTAATACTGGAACCATGACGCAAGATGGCCTGAAACGAGGGAGAGGGCGTCCACTTGGGAGTGGGAAGAAACAGCAATTGGCTTCTTTTGGTGGGCTGATATCTGATACACCTGCGAAGGGATTCACTCCTTTTATGGTCAACATTGCAAGTGGAGAAGACATTACACCAAAAATCTTGGAATTTTCTCAGATGCGGGCTAGAGCTTTATGTGTTATCTCAGCTCATGGAAGGGTCTCGAGCGTGACACTTCGTCAGCCTTCAACTCAAGGTGGCACTATCAAACATGAGGGAGATTTTGACATTTTGTGCATGTCTGGCTCTTTCATGCCTACTGAGAGTGGCAGCTTACTGAACCGAACTGGTGGAATAAGTGTTATCCTGAGTAATCCTGATGGCAGTCTCTTTGGTGGAAGAGTTGACGGACTGCTTGCTGCTTCTGGTCCTGTCAAGGTGATGGTTGGGACCTTTCTATGGGGAAGATTGAGGGGAAGGAACAATAAGCGAAAGGAACGTTCCGATGATGGAGAAGTGGCTGCTGAATCATCTCAGCAAGGGGCTCGCAATCCAGGCGCAGGCGCACTGAACAACATTTCGCCTAATCAGAATCTGACTCCGACCTCATCCTTAAGCCCATGGTCAGCAGCAGCATCGCGTCCAATGGAGACGCGTGAGTCCAATGCTGACATTGATTTAATGCGCGGTTGA 1050 0.4819 MDHADHMGLSGSASYYMQQRGLAGSGAQPELHVSSSFSHLSNPNLPFQSSIGGGTNIGSTLPLESSAISSQGVNVSGPTGVQSGETVKRKRGRPRKYGSDRVVSLALSPSPTPSSNTGTMTQDGLKRGRGRPLGSGKKQQLASFGGLISDTPAKGFTPFMVNIASGEDITPKILEFSQMRARALCVISAHGRVSSVTLRQPSTQGGTIKHEGDFDILCMSGSFMPTESGSLLNRTGGISVILSNPDGSLFGGRVDGLLAASGPVKVMVGTFLWGRLRGRNNKRKERSDDGEVAAESSQQGARNPGAGALNNISPNQNLTPTSSLSPWSAAASRPMETRESNADIDLMRG* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2551 349 MobiDBLite consensus disorder prediction 282 349 - -
Psa3g2551 349 MobiDBLite consensus disorder prediction 69 141 - -
Psa3g2551 349 CDD DUF296 157 271 IPR005175 -
Psa3g2551 349 MobiDBLite consensus disorder prediction 105 123 - -
Psa3g2551 349 ProSiteProfiles PPC domain profile profile. 153 295 IPR005175 -
Psa3g2551 349 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 322 - -
Psa3g2551 349 MobiDBLite consensus disorder prediction 69 83 - -
Psa3g2551 349 MobiDBLite consensus disorder prediction 293 330 - -
Psa3g2551 349 Pfam Plants and Prokaryotes Conserved (PCC) domain 158 271 IPR005175 -
Psa3g2551 349 SUPERFAMILY AF0104/ALDC/Ptd012-like 154 275 - -
Psa3g2551 349 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 322 IPR039605 GO:0003680
Psa3g2551 349 Gene3D - 158 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2551 Psa-Chr3 215179685 215185663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2551 1 349 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 40.164 6.41e-63 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2551 - - cam:101500720 421.779