Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2546 ATGGGGGTTCAATGCTCTAGCCTGGTTCCATGTTGTGTGAATTCACAAGTTAAAACATCTGATCTTGAAGTTCCGGATGATGAAAATGAGGATAGAATTGAGGCTAATAACGGGCCTGTGTTTCGTGAATTTTCGTTGGAGCAACTTAATAATGCAACGTCTGGTTTTAATGTTGAGAATATAGTTTCTGAACATGGTGAAAAGGCTCCAAACGTTGTTTATAAAGGGAAGATGGAGAACCAAACGAGGATAGTTGTTAAGAGGTTTAATAAAAGTGCTTGGCCCGATGCTCGGCAGTTTTTGGAAGAAGCTAAATCAGTTGGTCAGCTTCGTAACGAAAGATTGGCAAATTTACTTGGTTGTTGTTGTGAAGATGACGAGAGGTTGCTTGTGGCTGAATATATGCCGAATGAAACACTCGCAAAACACCTTTTCCACTGGGATGCCCAACCGATGAAATGGGCAATGCGACTCAGAGTTGTTCTGCATCTTGCAGAAGCTCTAGAATACTGCACAAGCAATGGACGTGGCCTCTATCATGACCTTAATGCATATAGAGTTCTATTTGATGAAGATGGTAATCCTAGGCTTTCGAGTTTTGGCCTTATGAAGAATAGTAGGGATGGAAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCGGAGTATCTCAGAACCGGGAGAGTAACACCAGAAAGTGTAATATATAGCTTCGGCACTCTTTTGCTTGACCTTCTTAGCGGGAAACATATCCCTCCAAGTCATGCCCTTGATTTGATTCGCGACAGAAATCTTCAGATGCTAACAGATTCTTGTCTGGAAGGACAATTTTCCGATGATGATGGAACTGAGTTGGTGCGCCTGGCATCTCGTTGTTTACAGTATGAACCTAGAGAGCGACCTAATACAAAGTCGTTAGTAACCGCTTTGGCTCCTCTTCAAAAAGAAACAGAGGTTCCTTCCCACTCGTTGATGGGTATCCAACATAGTGCTACTATTGTTGCTTCGCTGACCCCTCTTGGCGACGCATGTTCAAGAAAAGACTTGACTGCCATACATGAAGTTCTCGAAAGTATTGGCTATAAAGATGACGAAGGCGTGGCAAATGAGTTATCTTTCCAAATGTGGACGGATCAAATGCAGGACTCACTAACTAGTAAGCAAAAAGGAGATGCAGCTTTCCGGCACAAAGACTTCAAACTTGCAATAGAGTGCTACACTCAGTTCATTGATGTTGGAACAATGGTTTCTCCAACTGTCCATGCACGTCGCAGCCTGTGTTATCTCATTAACAACCAACCTCAGGAAGCTATGAACGATGCAATGCAAGCACAAGTAATTTCCCCTCTATGGCACATTGCATCTTATCTTCAATCTGTTTCTTTGGCCGGACTCGGAATGCCGAACGAATCTCAAGTTGCACTTTCAGAGGGAACGACACTGGAAGCCAAGCGAAATGCACCTACGGGGAAAAAGTGA 1479 0.432 MGVQCSSLVPCCVNSQVKTSDLEVPDDENEDRIEANNGPVFREFSLEQLNNATSGFNVENIVSEHGEKAPNVVYKGKMENQTRIVVKRFNKSAWPDARQFLEEAKSVGQLRNERLANLLGCCCEDDERLLVAEYMPNETLAKHLFHWDAQPMKWAMRLRVVLHLAEALEYCTSNGRGLYHDLNAYRVLFDEDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSDDDGTELVRLASRCLQYEPRERPNTKSLVTALAPLQKETEVPSHSLMGIQHSATIVASLTPLGDACSRKDLTAIHEVLESIGYKDDEGVANELSFQMWTDQMQDSLTSKQKGDAAFRHKDFKLAIECYTQFIDVGTMVSPTVHARRSLCYLINNQPQEAMNDAMQAQVISPLWHIASYLQSVSLAGLGMPNESQVALSEGTTLEAKRNAPTGKK* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2546 492 SUPERFAMILY TPR-like 382 480 IPR011990 GO:0005515
Psa3g2546 492 Gene3D Tetratricopeptide repeat domain 383 490 IPR011990 GO:0005515
Psa3g2546 492 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 488 IPR045845 GO:0004672|GO:0009742
Psa3g2546 492 Pfam Protein tyrosine and serine/threonine kinase 72 310 IPR001245 GO:0004672|GO:0006468
Psa3g2546 492 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2546 492 SUPERFAMILY Protein kinase-like (PK-like) 38 316 IPR011009 -
Psa3g2546 492 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Psa3g2546 492 PANTHER LRR RECEPTOR-LIKE KINASE 1 488 - -
Psa3g2546 492 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2546 Psa-Chr3 214956765 214961147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2546 10 313 Glycoside Hydrolase AT3G07070 33.434 2.40e-41 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Psa3g2546 PK_Tyr_Ser-Thr 1.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2546 K14500 - gmx:100781311 857.44