Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2522 ATGCAAAGGCTGGTTGGAATGAGTGAGGATGATGAAGAAATGGGAATGGGTGTGAAAGATGAGGATGACGAGGATGAGGATTACGAGGAAAATGGAGGCGAGCATGGAAATGCTTTACAAGTGGTAGAGTTTGATGGTGGGAGTGGGATGGGATCTGGAGCTGATGATAACAGGTTTCAGCAGCAATACGAGTTTCAAGAGCAAGTGGGCACTCCTCCAGGTGGAGGTAATAGAAGATCTAGACCGGTAGAAGAGAAAGAGAGGACAAAGCTAAGAGAAAGGCGCCGGAGGGCTATCACTGCACGGATCTTGGCAGGGCTTCGAAGGCATGGCAACTATAATCTTAGGGTTAGGGCTGACATAAATGATGTTATTGCTGCTCTAGCAAGGGAAGCTGGATGGGTGGTTCTTCCAGATGGCACTACTTTTCCTTCAAAATCTCAGGGTCAGATACCAGCTGGCGGCAATCCTGCAGTTGTTACTTCATCATCGTCCCATGTGCCTTCCCAACACCCTCCGTCTGTTTCCCTCAAGGGTGTTGCTTCTGGCAATAGGAGCCCTTTAGAGTACAATGCATGTCCGATGAAAGGTGTTTACATTCCATCTCCATCTCCATCCCCATCCCCTTATGATCTATCCTCAAGTTCCCGGTCTCAAACATCTATGTTAGGGGACAGAGAAGTGCAAAGAGACAATCCTCCTGTGATTGGTGGTTCAATAAATACCATTAATGAGAAGCAGATTTTTGACATTCCATCCAGATTACTGGAACGTGATTTTGCTGGGTCCCCATATGTTCCTGTTTATGTGATGCTACCGTTGGGAGTGATCAATATTAAATGTGAGCTTGTTGATCCGGATGCTCTACTAAAGCAGCTGAGGGTGTTGAAATCAGCAAATGTTGACGGTGTTATGGTAGACTGCTGGTGGGGAATAGTGGAAGCACATACTCCACAAGAGTATAATTGGAATGGTTACAAGAGACTTTTTCAAATGGTGCGTGAGCTTAAGCTTAAGTTGCAGGTTGTCATGTCTTTTCACGAATGCGGAGGCAATGTTGGTGATGATGTTTGTATTCCCTTGCCCCATTGGGTTGCTGAAATTGGTAGGAGCAATCCAGATATTTTTTTCACTGATAGAGAGGGAAGACGCAACCCTGAATGTCTTTCTTGGGGAATAGATAAGGAACGTGTTTTGAGAGGTCGGAATGCTGTGGAGGTTTATTTTGATTTCATGAGAAGTTTCCGGATAGAGTTTGACGAGTATTTTGAGGATGGTTTTATCTCGCTGATTGAAGTTGGACTAGGTCCATGTGGAGAGCTAAGATACCCATCTTGTCCAGTAAAGCATGGTTGGAGATATCCTGGTATTGGCGAGTTCCAGTGCTATGATCAGTATATGTTAAAAAGTCTTAGAAAAGCAGCAGAAGCAAGAGGCCACACTATTTGGGCTAGAGGGCCAGATAACGTGGGTACCTATAATTCTCAGCCACACGAAACAGGTTTCTTTCGCGATGGGGGTGATTATGATGGCTTCTATGGCAGGTTTTTTCTCAACTGGTATTCTCAGGCTTTAGTTGATCATGGAAACCGGGTACTCTCTTTGGCAAAATTAGCTTTTGAGGGGTCCTGCATTGCTGCAAAGCTATCAGGTGTTTATTGGTGGTACAAGACTGCTAGTCATGCTGCTGAGTTAACTGCTGGGTATTATAATCCATGCAATCGTGATGGCTATGCTGCAATTGTTGCAATGTTAAAGAGAAATGGAGTTAGCTTAAACATTGCTTGTGTTGACCTGTGCACATTGAATCAACACGAGAGCTTTCCAGAGCCATATGCTGATCCTGAGCGATTAGTTTGGCAACTGTTGAATGCCGGGTGGGATGTTGGACTACCCGTCGTCGGTGAGAATGCACTTCCTTGCCTAAACAGAGTTGGCTATAACAATGTTTTGGATAATACCAAGCCTGTGAATGATCCAGATGGAAGACACTTTTCTTCCTTTACATACCTGAGGCTCAGTCCAGTTCTTCTTGAACGACAAAACTTCCTAGAGTTTGAACGATTTGTCAAGAGAATGCATGGAGAAGCTGTTCTTGATCTTCAGGCGAGCAACCTAGAGAATGATGTTGAGGCTATTCATGCTCAGGAGATGCAGGTTCAAGTTGTTCATGAGCTAGTGGTTGAGACATATGTGATACATGTTACTGATGAGGTGATTGATGAGGTGGTCGAGTTAGATGTCCCTATTGCTGATGAGGTGACTGCCACAGATCTGATCCCTTATGCTACTAGTGATGCAGAGGTCACAACTCCTGCTTTGACGGAGCCGTCTATGAACACTGATGAGGAGTTTTCAGAAGGACCCATTGACCGATCGATGCTTATGCTGACCAGGTGA 2400 0.45 MQRLVGMSEDDEEMGMGVKDEDDEDEDYEENGGEHGNALQVVEFDGGSGMGSGADDNRFQQQYEFQEQVGTPPGGGNRRSRPVEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSKSQGQIPAGGNPAVVTSSSSHVPSQHPPSVSLKGVASGNRSPLEYNACPMKGVYIPSPSPSPSPYDLSSSSRSQTSMLGDREVQRDNPPVIGGSINTINEKQIFDIPSRLLERDFAGSPYVPVYVMLPLGVINIKCELVDPDALLKQLRVLKSANVDGVMVDCWWGIVEAHTPQEYNWNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERVLRGRNAVEVYFDFMRSFRIEFDEYFEDGFISLIEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYMLKSLRKAAEARGHTIWARGPDNVGTYNSQPHETGFFRDGGDYDGFYGRFFLNWYSQALVDHGNRVLSLAKLAFEGSCIAAKLSGVYWWYKTASHAAELTAGYYNPCNRDGYAAIVAMLKRNGVSLNIACVDLCTLNQHESFPEPYADPERLVWQLLNAGWDVGLPVVGENALPCLNRVGYNNVLDNTKPVNDPDGRHFSSFTYLRLSPVLLERQNFLEFERFVKRMHGEAVLDLQASNLENDVEAIHAQEMQVQVVHELVVETYVIHVTDEVIDEVVELDVPIADEVTATDLIPYATSDAEVTTPALTEPSMNTDEEFSEGPIDRSMLMLTR* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2522 799 Pfam Glycosyl hydrolase family 14 269 688 IPR001554 GO:0000272|GO:0016161
Psa3g2522 799 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 300 314 IPR001554 GO:0000272|GO:0016161
Psa3g2522 799 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 321 339 IPR001554 GO:0000272|GO:0016161
Psa3g2522 799 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 343 364 IPR001554 GO:0000272|GO:0016161
Psa3g2522 799 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 436 458 IPR001554 GO:0000272|GO:0016161
Psa3g2522 799 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 509 528 IPR001554 GO:0000272|GO:0016161
Psa3g2522 799 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 543 559 IPR001554 GO:0000272|GO:0016161
Psa3g2522 799 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 560 571 IPR001554 GO:0000272|GO:0016161
Psa3g2522 799 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 578 601 IPR001554 GO:0000272|GO:0016161
Psa3g2522 799 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 618 640 IPR001554 GO:0000272|GO:0016161
Psa3g2522 799 PRINTS Plant beta-amylase signature 426 435 IPR001371 GO:0000272|GO:0016161
Psa3g2522 799 PRINTS Plant beta-amylase signature 669 683 IPR001371 GO:0000272|GO:0016161
Psa3g2522 799 PRINTS Plant beta-amylase signature 684 698 IPR001371 GO:0000272|GO:0016161
Psa3g2522 799 MobiDBLite consensus disorder prediction 145 174 - -
Psa3g2522 799 Pfam BES1/BZR1 plant transcription factor, N-terminal 76 207 IPR008540 -
Psa3g2522 799 PANTHER BETA-AMYLASE 74 702 - -
Psa3g2522 799 MobiDBLite consensus disorder prediction 14 31 - -
Psa3g2522 799 ProSitePatterns Beta-amylase active site 1. 347 355 IPR018238 GO:0000272|GO:0016161
Psa3g2522 799 MobiDBLite consensus disorder prediction 204 231 - -
Psa3g2522 799 MobiDBLite consensus disorder prediction 79 93 - -
Psa3g2522 799 Gene3D Glycosidases 257 741 - -
Psa3g2522 799 MobiDBLite consensus disorder prediction 209 226 - -
Psa3g2522 799 PANTHER - 74 702 IPR001554 GO:0000272|GO:0016161
Psa3g2522 799 SUPERFAMILY (Trans)glycosidases 260 700 IPR017853 -
Psa3g2522 799 MobiDBLite consensus disorder prediction 54 68 - -
Psa3g2522 799 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2522 Psa-Chr3 213348859 213357598 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2522 1 700 Glycoside Hydrolase AT2G45880 64.438 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Psa3g2522 Glyco_hydro_14 1.5e-105 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2522 K01177 - gmx:100805560 1127.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2522 3 213348859 213357598 Psa3g2522 3 213348859 213357598 ECH