Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2510 ATGGCTGTGGTAACAACTCCTGTACCAGCAACAATACAAAGAACAGGTTCTATGAGCTCGGTTCGCGAAGTTGGGGGAGAAATTGAAGAGGAACCTAACACAGCTGTGGTTGATGAAGCAATCTATGTTGCTGTATCAAAGGATGTAAAAGAGAGCAAAGTGAATCTGATCTGGGCAATTCAGAACTCTGGTGGAAAGAGGATCTGTATCCTCTTTGTTCATGTGCCTGCAACAATGATCCCTTTGATGGGTGCTAAATTTCCTGCAAGTTCACTGAAAGAGCAAGAAGTTCGAGCATACCGGGAAATTGAAAGGCAAAACATGCATAAGACTCTTGATGAATATCTTCGAATCTGTCATCGGATGGGGGTGCGAGCAGAAAAACTGCATATTGAAATGGATAACATTGAAAGAGGAATTATAGAACTTATCTCCCAACATGGAATCCGGAAGCTTATTATGGGAGCAGCATCTGATAGGAATTATTCTAGGAGATTGATGGACCTCAAATCTAAGAAAGCCATACATGTATGTGAACAAGCTCCGGCTTCTTGCCATATACAGTTTATCTGCAAAGGACACCTTATACACACAAGGGATCGCAGTTTAAATGAACGAAGCTTAGAGGTTGCATCTCCTTTGGTGCAGCAAGTGCCAAACTCTGTGAGATCTTTGAGATCTCAATCAGTTACACTGGGGGAAATTCCTATGACAGATTCCTTTGGTTCTATTCAAGAGTTATTTCGCAGAGTTAGGTCTGCCAATGATGGACAGAGAGCGAGCATTACGACTGATTCTTCTCCAATCGACACTGTAGGGTTTTCAACTCCATCTAACAGGCGAGGCACAGACGTAAGTTCTGATGAGTCTGATAGGTTGTCAAGGATGAGTCCTTCAGGTTTATCGACATGCTCGGATAGTGTAGTTGAACCAACACTGACCCCAAATTCGGTTGCTGAGAGCAGTGAGAATGCATTAGACTTGACTTTTAGTCGCATGGTTATAAAGGAGGATCTTCATCGTTTATCGCCACCAAGTGTATTGCAGGATGGTGGAGTAAACGATACGCTCTATGACCAACTTGAACAGGCTATGTCTGAGGCTAATAATGCTACTCGACATGCATATCAAGAAACTTTTAGGCGCGGAAAAGCTGAAAAAGATGCCATTGAAGCTATACGCAGGGCTAAAACATCTGAAAGCTTATATACAGAGGAGTTGAATCTGAGAAAAATGGCGGAGGAAGAATTAAAAAAGGAGAAAGAAGAACTCGAGAGAATGACGAGCCAGAGAGACAAAGTTAAGGAAGAACTTCAACTTGCTGTGGATTTGAAGTCATCGCTAGAGAGTCAACTTGCGTCGTCTGAAGTTATGATACAGGAGTTAGAGAAGAAAATTATATCTGCCGTGGAGCTGTTACAAAGCTACAAGAACGAACGAGATGAATTGCAGATACAGCGCGATAATGCATTAAGAGAGGCTGAAGGTTTAAGGAAAAAACAAGGAGAGGGCTCGAGCACTCATGTATCTCAGTTGTTCTCGGAATTCTCCTTTTCAGAAATCGAAGAAGCAACAAGTAATTTTGATCCATCCCGAAAGATCGGAGAAGGTGGATATGGAAATATATATAAAGGTGTCCTCCGTCATACCGAAGTTGCTATAAAAATTTTGCACGCCAACAGCATGCAAGGACCCTTGGAGTTTCAGCAGGAGGTGGATGTATTGAGTAAGCTCAGGCACCCCAATCTTATCACTCTTATAGGAGCCTGCCCGGAATCCTGGTCTCTTGTCTACGAGTATTTACCAAACGGAAGTCTTGAAGACCGTCTTGCGTGCAAGGATAACACACATCCCTTATCATGGCAAACGCGGATTCGCCTTGCTGCTGAACTCTGCTCCGCTCTCATCTTTCTTCATTCGAGTAAACCTCACAGCATAGTGCACGGTGACTTGAAACCCTCCAATATCATCCTAGATGCAAACCTTGTCAGTAAGCTTAGTGACTTTGGAATCTGTCGCATATTATCAAATCTCGAGAATTCTAGTAATAATAATACGCTGTTTTGGAGAACCGATCCAAAGGGAACTTTTGTATACATGGATCCCGAATTCCTTGCGTCTGGCGAACTCACTCCAAAGTCCGATGTTTATTCATTCGGAATCATATTATTGAGATTGTTGACCGGAAGACCAGCCTTAGGAATAACTAAGGAAGTGAAATATGCTCTCGATACAGGAAAGTTGACATCTTTATTGGATCCTTTGGCCGGCGATTGGCCATTTGTCCAGGCCGAGCAGTTGGCCCGGTTGGCTTTGCGGTGCTGTGAGATGAGTCGGAAGAGCCGGCCGGACCTTCATTCAGATGTATGGAGGATACTCGATGCAATGAGAGCTTCTTCTGGAGGTACAAACTCTTTTGGCCTAAGTTCTGAAGGACCTCACCAACCTCCTTCCTATTTTATTTGTCCAATCTTCCAGGAAGTCATGCGAGATCCACACGTAGCTGCAGATGGTTTTACCTACGAAGCCGAGGCTATCCGAGGATGGCTCGACAGTGGTCACGACACTTCACCGATGACAAACAGCACCCTTGCACATCAGAGTCTTGTGCCCAACCGCGCTCTTCGCTCCGCGATCCAGGATTGGCTTCAAAGTCACTGA 2661 0.4423 MAVVTTPVPATIQRTGSMSSVREVGGEIEEEPNTAVVDEAIYVAVSKDVKESKVNLIWAIQNSGGKRICILFVHVPATMIPLMGAKFPASSLKEQEVRAYREIERQNMHKTLDEYLRICHRMGVRAEKLHIEMDNIERGIIELISQHGIRKLIMGAASDRNYSRRLMDLKSKKAIHVCEQAPASCHIQFICKGHLIHTRDRSLNERSLEVASPLVQQVPNSVRSLRSQSVTLGEIPMTDSFGSIQELFRRVRSANDGQRASITTDSSPIDTVGFSTPSNRRGTDVSSDESDRLSRMSPSGLSTCSDSVVEPTLTPNSVAESSENALDLTFSRMVIKEDLHRLSPPSVLQDGGVNDTLYDQLEQAMSEANNATRHAYQETFRRGKAEKDAIEAIRRAKTSESLYTEELNLRKMAEEELKKEKEELERMTSQRDKVKEELQLAVDLKSSLESQLASSEVMIQELEKKIISAVELLQSYKNERDELQIQRDNALREAEGLRKKQGEGSSTHVSQLFSEFSFSEIEEATSNFDPSRKIGEGGYGNIYKGVLRHTEVAIKILHANSMQGPLEFQQEVDVLSKLRHPNLITLIGACPESWSLVYEYLPNGSLEDRLACKDNTHPLSWQTRIRLAAELCSALIFLHSSKPHSIVHGDLKPSNIILDANLVSKLSDFGICRILSNLENSSNNNTLFWRTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYALDTGKLTSLLDPLAGDWPFVQAEQLARLALRCCEMSRKSRPDLHSDVWRILDAMRASSGGTNSFGLSSEGPHQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDSGHDTSPMTNSTLAHQSLVPNRALRSAIQDWLQSH* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2510 886 Pfam Protein kinase domain 531 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2510 886 Coils Coil 403 500 - -
Psa3g2510 886 MobiDBLite consensus disorder prediction 256 283 - -
Psa3g2510 886 Gene3D Phosphorylase Kinase; domain 1 498 600 - -
Psa3g2510 886 ProSitePatterns Protein kinases ATP-binding region signature. 534 555 IPR017441 GO:0005524
Psa3g2510 886 MobiDBLite consensus disorder prediction 292 309 - -
Psa3g2510 886 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 52 168 - -
Psa3g2510 886 SUPERFAMILY RING/U-box 810 885 - -
Psa3g2510 886 PANTHER U-BOX KINASE FAMILY PROTEIN 31 885 - -
Psa3g2510 886 ProSiteProfiles U-box domain profile. 815 886 IPR003613 GO:0004842|GO:0016567
Psa3g2510 886 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Psa3g2510 886 CDD RING-Ubox_WDSUB1_like 820 861 - -
Psa3g2510 886 MobiDBLite consensus disorder prediction 255 309 - -
Psa3g2510 886 Pfam U-box domain 817 886 IPR003613 GO:0004842|GO:0016567
Psa3g2510 886 Gene3D HUPs 33 179 IPR014729 -
Psa3g2510 886 Coils Coil 354 378 - -
Psa3g2510 886 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 814 886 IPR013083 -
Psa3g2510 886 CDD STK_N 41 193 - -
Psa3g2510 886 PANTHER OS02G0152300 PROTEIN 31 885 - -
Psa3g2510 886 SUPERFAMILY Protein kinase-like (PK-like) 503 786 IPR011009 -
Psa3g2510 886 ProSiteProfiles Protein kinase domain profile. 528 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2510 886 Gene3D Transferase(Phosphotransferase) domain 1 601 805 - -
Psa3g2510 886 SMART Ubox_2 819 882 IPR003613 GO:0004842|GO:0016567
Psa3g2510 886 SMART serkin_6 528 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2510 Psa-Chr3 212793604 212799801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2510 1 886 U-box Gene Family AT2G45910 52.968 0.0 874
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Psa3g2510 Pkinase 1.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2510 - - gmx:100807515 1388.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2510 3 212793604 212799801 Psa3g2510 3 212793604 212799801 ECH
Psa4g3619 4 304117360 304120380 Psa3g2510 3 212793604 212799801 ECH
Psa3g2510 3 212793604 212799801 Psa4g3619 4 304117360 304120380 PCT