Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2494 ATGCTGGGTAGTGAGCAGCCTTTGGATTTGTATAAGCTGTTCATGGTGGTGAAGGATAAAGGTGGTTATGATCTTGTTTGTAAGAACAGGTTGTGGGATTTGGTTGGGGAAGAATATGGGCTGGGTGTGAATGTTGGTTCTTCTGTTGAACTTGTTTACAGTAAGTATTTGAGTACGTTAGAGACGCCGTTGAAGAATGTAGTTGAAGGTGAGTTTCCTAAGTGTGATTTAGTGGATGATAGAGTTAAGTTTGGTGAGCGGTTAATGGAGTTGCAAGCTGAGTTTTTGCTGGATGATTATGGTGAGGAGGATGTAGGGGATGAACTCAAGAGTGTGCATGAATGTAGGAGGAAGTTTTGTGGTACCAATAGGGTGAAGGGTGTGAACCCTGAGTTGAATGCGGCTGAACTCGAAAGGGTTTATGACTACATAGATGGGAGGAAGTTATGTGATGCTAATAGAGTGAAGGACGCCAATCTTGAGGCTATTGCGGTTAAGAAAGTTAAGAGCGGAGGAGTTATTGATGTGTGTATGCAGGATAGTAGGACGGATGAGATTAGTCTCGGAAAGTTGGGCGACCAAAATGATGCTGTGGAAATAATGGAAGAGTTTGACGAGGGTAAAATAAAAGCAGTGGATGTATCCGACACAGTTAACGACATGCTCCGATTGTCAGATGGAAGTAAGAGGTGTGATAATGACGATGACAATGATTTGTTAATATTGGATACATCTAGTGTTAATAGAGAGAGCTTTGGTCGGAAGAGGAAGAGAGAGTCGATGTCAGAAATGCTATGTTGGGTTACTAGCACTGCAAAGAATATCTGTGATCCTGTTGTAGGTTCAATGCCTGAAAAGTCAAAGTGGAAGTCTTACAGTAATGAAGAGACTTGGAAGAAGGTTTTGTTGTTTCGAGAAGCTGCCTTTTTGAAAAAGGAATTTGGATCAAACTGTGAAAAACTCAGTTGGCTGGCTCAGAAGATGCATCCTTGCATGTATGATGATAACCTTGGGGTAAATTACAATCTTAGACAGAGGATCAAATCTGACAATGGAGTTTTAGTTGGAAAATCTGCATCTATCTTTTCAAGGTTGCGAAGAAACTCAAGTGATACTGAAAGCAGTACCAAAAAAAAGTTACGTGACTCCTGTGCTTCTGAATCAGTTCTTGATACACCTCCCACAGTGAACATTCCTCTTGGGCCAAACCATCAAGCTGAGGTGCCTGAATGGACTGGGACTATTCATGAGAGTGATTCTAAGTGGCTGGGAACCCAAATATGGCCACTAAAAACTGTAAAATCCAGACTTTTGGACAGGGAATCTGTTGGAAATGGAAGACGCGATTCATGTAAATGCCGAGTACAAGGTTCTGTTGAGTGCGTTCGATTTCACATTGCCGAGAAAAGGGCTAAACTCAAGCTGGAATTAGGCGTGGCCTTTTATCAGTGGAATTTAGATAAGATAGGTGAAGAAGTTAGGCGATGGTGGACACCACAAGAAGAGAAGAAGTTCAAAGATGTAGTGAAATCGAATCCTGCTTCACTCGATAGACGTTTCTGGGATGATATTTTCAAAGCATTTCCTAAGAAGAGCAGGGAAAGTTTAGTCAACTACTACTTCAATGTCTTTCTTTTGCAGCGCAGAGCATACCAGAATAGGCATACTCCTGATAACATCGACAGCGATGACGATGAATCAGAGTTTACACCATTGAAGGGTGTTTTTGGACATCAGACTAGTAAACCACCCAGCATCACCTTATTATCCCCTAAGAAGCCACAAACAAAGCCACAGTCAAAGGGAAGATAG 1812 0.4189 MLGSEQPLDLYKLFMVVKDKGGYDLVCKNRLWDLVGEEYGLGVNVGSSVELVYSKYLSTLETPLKNVVEGEFPKCDLVDDRVKFGERLMELQAEFLLDDYGEEDVGDELKSVHECRRKFCGTNRVKGVNPELNAAELERVYDYIDGRKLCDANRVKDANLEAIAVKKVKSGGVIDVCMQDSRTDEISLGKLGDQNDAVEIMEEFDEGKIKAVDVSDTVNDMLRLSDGSKRCDNDDDNDLLILDTSSVNRESFGRKRKRESMSEMLCWVTSTAKNICDPVVGSMPEKSKWKSYSNEETWKKVLLFREAAFLKKEFGSNCEKLSWLAQKMHPCMYDDNLGVNYNLRQRIKSDNGVLVGKSASIFSRLRRNSSDTESSTKKKLRDSCASESVLDTPPTVNIPLGPNHQAEVPEWTGTIHESDSKWLGTQIWPLKTVKSRLLDRESVGNGRRDSCKCRVQGSVECVRFHIAEKRAKLKLELGVAFYQWNLDKIGEEVRRWWTPQEEKKFKDVVKSNPASLDRRFWDDIFKAFPKKSRESLVNYYFNVFLLQRRAYQNRHTPDNIDSDDDESEFTPLKGVFGHQTSKPPSITLLSPKKPQTKPQSKGR* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2494 603 Pfam Myb-like DNA-binding domain 497 543 IPR001005 -
Psa3g2494 603 CDD SANT 497 544 IPR001005 -
Psa3g2494 603 Pfam ARID/BRIGHT DNA binding domain 5 60 IPR001606 GO:0003677
Psa3g2494 603 SMART ELM2_2 398 446 IPR000949 -
Psa3g2494 603 SUPERFAMILY ARID-like 5 66 IPR036431 GO:0003677
Psa3g2494 603 CDD ARID 6 61 - -
Psa3g2494 603 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Psa3g2494 603 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 1 597 - -
Psa3g2494 603 SMART sant 493 546 IPR001005 -
Psa3g2494 603 MobiDBLite consensus disorder prediction 370 385 - -
Psa3g2494 603 MobiDBLite consensus disorder prediction 580 603 - -
Psa3g2494 603 MobiDBLite consensus disorder prediction 571 603 - -
Psa3g2494 603 SMART bright_3 2 66 IPR001606 GO:0003677
Psa3g2494 603 MobiDBLite consensus disorder prediction 366 388 - -
Psa3g2494 603 Gene3D - 2 71 IPR036431 GO:0003677
Psa3g2494 603 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2494 Psa-Chr3 212175202 212181046 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Psa3g2494 ARID 3.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2494 - - mtr:MTR_7g078120 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2494 3 212175202 212181046 Psa3g2494 3 212175202 212181046 ECH