Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2492 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACATCACTTGCAAGGAACACCAGTTTATTACTATTGTCCGCCAACTTTTGAAGAACGCGGATCTTCAACCTCTAATGATGGTACCACTGCTTCGCTCTCTGCTGGATTTCTGGTTGGATTAAACTTTGAAGCGGCTATACCTGATACATTCCGGTCTCCTCCTGTGCCTCTTCCTTATGACATTGTCTTCGGAGGTTCCGCGTCAACAGACTCTGAGTCTGGCAGAGAAACCGTTAGTATGAGTAGTTTTGAAACTTCTATTGCACGCGATGATGATATTGAAGAATCAGATTGTAAAGATCAAACCAAATGTACACCTCTATCTCCAAAGAAGAAAGAACTATCAAAATCAAATGGAACACAAGTATTGGCGACAGAAGAAGAGGATGTCTGCCCAATTTGTCTCGAAGAATATGACGACGAGAATCCTAAAAATCTGACAAAATGTGAACATCATTTTCACCTATCTTGCATTCTTGAATGGATGGAAAGAAGTGACTCCTGTCCTAATTGCGACCAGGAGATGATATTTTGA 564 0.4149 MGGCCCSARKHHLQGTPVYYYCPPTFEERGSSTSNDGTTASLSAGFLVGLNFEAAIPDTFRSPPVPLPYDIVFGGSASTDSESGRETVSMSSFETSIARDDDIEESDCKDQTKCTPLSPKKKELSKSNGTQVLATEEEDVCPICLEEYDDENPKNLTKCEHHFHLSCILEWMERSDSCPNCDQEMIF* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2492 187 MobiDBLite consensus disorder prediction 78 110 - -
Psa3g2492 187 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 187 - -
Psa3g2492 187 SMART ring_2 141 181 IPR001841 -
Psa3g2492 187 Pfam Ring finger domain 140 181 IPR001841 -
Psa3g2492 187 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 187 - -
Psa3g2492 187 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Psa3g2492 187 MobiDBLite consensus disorder prediction 78 96 - -
Psa3g2492 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 186 IPR013083 -
Psa3g2492 187 SUPERFAMILY RING/U-box 135 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2492 Psa-Chr3 212111079 212114147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2492 1 187 C3H Transcription Factor Family AT4G00335 55.080 5.91e-70 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2492 - - gmx:100812687 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2492 3 212111079 212114147 Psa3g2492 3 212111079 212114147 ECH
Psa3g2492 3 212111079 212114147 Psa4g3626 4 304854331 304861334 PCT