Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2485 ATGGCTACAACCCCTTCGCTTCTACACTCTTCCGGCTCCTCTTTTCTCCCTCAATTTCGAACTTTTCCAACCCGATTTTCTTCTTCTTCCTTGTTTTCTCATGGAAACAACCGGCACGGAAGTGGAGTGGTGTCCGTGAAGGCCACGGCTTCTGGGGCTGTGTTGGTGGAGAAGTCTGAAGCAGAGAAGGTTTATAGACTCAAAACAACTTACAATGAGAAAATTGTTCCTTTGCTCATGGAAGAGTTCTCTTACACCAACATTCATCAGGTGCCTAAAGTTGATCAGATTGTGGTAAACTGTGGTATTGGAGAAGCTGCACAGAATGCAAAAGGTTTGGATGCAGCAATTAATGATCTAGCATTGATCACTGGGCAGAGGCCTGTTAAGACCCGGGCGAGGATTTCTGTTGCCACCTTCAAGATCAGGGAAGGTCAACCACTTGGAATTGCTGTGACACTCCGAGGAAAAATAATGTACTCATTTCTAGACCGAGTTATCAACTTAGGACTTCCTAGGACAAGAGATTTTCAAGGTTTGAATCTAAGCAGCTTTGATGGGAATGGAAATTTCAACATTGGTATCAAGGACCAAACAGTGTTCCCCGAGCTGAAATCTGGTTTAGGTACACCTAGAGGAATGGATGTATGCATCAAAACAACTGCTAAAACTGATCAAGAAGGACAAAAATTACTAGCTCTCATGGGTATGCCCTTCAGAGAGGGAGTTGAAGTTACTCAAATAGTTCGTAAAAAGAAGTTGAGGTCTCATCATTTTGATGCAAAATCAAAGGGTAGAGGAGATAGAGCAAAGAAGTAA 819 0.4298 MATTPSLLHSSGSSFLPQFRTFPTRFSSSSLFSHGNNRHGSGVVSVKATASGAVLVEKSEAEKVYRLKTTYNEKIVPLLMEEFSYTNIHQVPKVDQIVVNCGIGEAAQNAKGLDAAINDLALITGQRPVKTRARISVATFKIREGQPLGIAVTLRGKIMYSFLDRVINLGLPRTRDFQGLNLSSFDGNGNFNIGIKDQTVFPELKSGLGTPRGMDVCIKTTAKTDQEGQKLLALMGMPFREGVEVTQIVRKKKLRSHHFDAKSKGRGDRAKK* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2485 272 ProSitePatterns Ribosomal protein L5 signature. 120 136 IPR020929 GO:0003735|GO:0005840|GO:0006412
Psa3g2485 272 Pfam Ribosomal protein L5 87 143 IPR031310 -
Psa3g2485 272 SUPERFAMILY RL5-like 66 240 IPR022803 -
Psa3g2485 272 PANTHER 54S RIBOSOMAL PROTEIN L7, MITOCHONDRIAL 61 241 - -
Psa3g2485 272 Gene3D - 58 241 IPR022803 -
Psa3g2485 272 Pfam ribosomal L5P family C-terminus 147 239 IPR031309 -
Psa3g2485 272 Hamap 50S ribosomal protein L5 [rplE]. 64 241 IPR020930 GO:0003735|GO:0005840|GO:0006412
Psa3g2485 272 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 61 241 IPR002132 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2485 Psa-Chr3 211528062 211531043 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2485 93 198 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 30.189 2.08e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2485 K02931 - gmx:100818896 400.593