Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2481 ATGACACAGGTGACGTCGATGATGGAAGGAACAGAAGAGAGGGAGGAAAATGCTGCAGAACCGGAACCCAAAAACTCGGACGAGTCAACTCGTCCCGAAGATGACAACGAAGAAGAAGAAGAAACCGACGCGGTGGCGGTGGTTGAAGAGATCCAAGGAGTCATCGAATTGGTTGTTCAATTCGGCGAATATCGAAGAATGCAAAGGAAAGAATCTCACAATCTCGCTCGTCGTTTCAAACACATGTTGCCGCTTATGGAAGACCTTCGTGATCTTCATCAACCTGTTCCTCAAAACGGCCTCGTTTGGTTGAAGAACCTTAGGGATGCGCTTTTGTTCGCTAAGGACTTGTTGAAATTGTGCAGCCAAGGAAGCAAAATTCACCTCGCATTGGAGGGTGAGGCTGTTATGATCAAATTTCAGAAGGCTTATAAAAAATTAAGCCGAGCTTTTAAAGGTGTGCCTTTTGAAGAATTAGGAATCTCTGATGAAGTGAAAGAACAGCTTGAGCTAATGCACGTGCAACTCACGAGGGCCAGGAGAAGGACTGATACACAGGACATAGAGTTAGCAATGGATATGATGGTTGTGTTCTCCGACGAAGATGATCGTAATGCCGATAGCGCTATTATCGAAAGGCTTGCAAAAAAGTTGGAGCTTCACAGTGTTGAGGATCTTGAGGTAGAAACAGTGGCTGTTGGATACCTTGCTAGAGAAAGAAAGGGACAACAAGAAGTGAGCACACAGAAAATAATTGGCCTTCTTAACAAATTCAAAAGGATTGCAGGTATGGAAGAAACCAGCATTGTTCTTGATGATGATCCTGCCATGCCTAATAAGAGTTTTGGAAGAAGCACTTCTTTGGTCATCCCTCATGAGTTTCTATGTCCAATAACACTTGAAATCATGACAGATCCTGTTATTGTTGCAAGTGGACAGACTTATGAAAGGGAAAGTATAGAGAAGTGGTTCAAATCCAATCACAACTCTTGCCCAAAGACAAGGCAACCACTGGAACATCTTCAATTAGCACCAAACTGTGCCTTAAAAAACTTAATTGCTGAATGGTGTGAGAAACACAACTTCAAACTTCCAAAAATCTGCACTTCCTCTCAAGAAACATCTTCCACTGAAAACCAAGAAGCAATTCCATCTTTGGTTGAAAGCCTATGGTCAATCAACTTAGAGCATCAAAGAAAGGCGGTCGAGAGAATACGCATGTTATCGAAAGAAAATTCAGAGAACAGAATTTTAGTTGCCGAGCATGGAGGAATACCGCCATTGGTACAATTACTATCCTATCCAGATTCAAAAATAAAGGAGCATGCTGTTACAGCACTTTTAAATTTATCCATTGATGAAGGTAACAAAAAACTCATATCCAAAGAAGGTGCTATTCCAGCTATAATAGAAGTTTTGGAAAACGGAAGTATTGTAGCTAAAGAAAACTCAGCAGCAGCTTTATTTAGCTTATCAATGCTGGATGAAAATAAAGAGGTTGTTGGAATGTCAAATGGGTTTCAACCTTTGGTAGCTTTATTACAAAATGGAACAGTTAGAGGAAAAAAAGATGCAGCTACAGCACTTTTTAGCTTATCATTAAACAATGCAAATAAAGATAGAGCTATAAGAGCTGGAATTGTGACACCTTTACTTGAATTGTTAAAGGACAAAAACTTGGGAATGGTGGATGAAGCACTATCTATTTTACTACTACTTGTGTTGAATCCTGAAGGGAGACAAGAGATTGGACAGTTACCTTTTATTGAAACTCTTGTTGAGTTTACTAGAGAAGGGACTCCTAAGAATAAGGAATGTGCAGCATCTGTTCTTCTGGAGTTGTGTGTGAGTAATTCTTCATTTACATTGGCAGCACTTCAGTTTGGAGTTTATGATCATTTAATTGAGATTAAAGAAAGTGGCACAAATAGAGCACAGAGGAAAGCAAATGCAATTTTAGAACTCATAAGGAAGAGTGAACAAATTTAA 1989 0.3982 MTQVTSMMEGTEEREENAAEPEPKNSDESTRPEDDNEEEEETDAVAVVEEIQGVIELVVQFGEYRRMQRKESHNLARRFKHMLPLMEDLRDLHQPVPQNGLVWLKNLRDALLFAKDLLKLCSQGSKIHLALEGEAVMIKFQKAYKKLSRAFKGVPFEELGISDEVKEQLELMHVQLTRARRRTDTQDIELAMDMMVVFSDEDDRNADSAIIERLAKKLELHSVEDLEVETVAVGYLARERKGQQEVSTQKIIGLLNKFKRIAGMEETSIVLDDDPAMPNKSFGRSTSLVIPHEFLCPITLEIMTDPVIVASGQTYERESIEKWFKSNHNSCPKTRQPLEHLQLAPNCALKNLIAEWCEKHNFKLPKICTSSQETSSTENQEAIPSLVESLWSINLEHQRKAVERIRMLSKENSENRILVAEHGGIPPLVQLLSYPDSKIKEHAVTALLNLSIDEGNKKLISKEGAIPAIIEVLENGSIVAKENSAAALFSLSMLDENKEVVGMSNGFQPLVALLQNGTVRGKKDAATALFSLSLNNANKDRAIRAGIVTPLLELLKDKNLGMVDEALSILLLLVLNPEGRQEIGQLPFIETLVEFTREGTPKNKECAASVLLELCVSNSSFTLAALQFGVYDHLIEIKESGTNRAQRKANAILELIRKSEQI* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2481 662 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 37 660 - -
Psa3g2481 662 CDD RING-Ubox_PUB 294 336 IPR045210 -
Psa3g2481 662 Pfam U-box domain 290 361 IPR003613 GO:0004842|GO:0016567
Psa3g2481 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Psa3g2481 662 SUPERFAMILY RING/U-box 289 366 - -
Psa3g2481 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 363 IPR013083 -
Psa3g2481 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 464 506 IPR000225 GO:0005515
Psa3g2481 662 ProSiteProfiles U-box domain profile. 289 363 IPR003613 GO:0004842|GO:0016567
Psa3g2481 662 MobiDBLite consensus disorder prediction 9 31 - -
Psa3g2481 662 Gene3D - 42 157 IPR036537 GO:0007166
Psa3g2481 662 Gene3D - 364 661 IPR011989 -
Psa3g2481 662 SMART arm_5 576 616 IPR000225 GO:0005515
Psa3g2481 662 SMART arm_5 535 575 IPR000225 GO:0005515
Psa3g2481 662 SMART arm_5 412 452 IPR000225 GO:0005515
Psa3g2481 662 SMART arm_5 494 534 IPR000225 GO:0005515
Psa3g2481 662 SMART arm_5 453 493 IPR000225 GO:0005515
Psa3g2481 662 SUPERFAMILY ARM repeat 378 654 IPR016024 -
Psa3g2481 662 PANTHER U BOX DOMAIN-CONTAINING 37 660 - -
Psa3g2481 662 SMART Ubox_2 293 356 IPR003613 GO:0004842|GO:0016567
Psa3g2481 662 MobiDBLite consensus disorder prediction 1 44 - -
Psa3g2481 662 Pfam Armadillo/beta-catenin-like repeat 412 451 IPR000225 GO:0005515
Psa3g2481 662 Pfam Armadillo/beta-catenin-like repeat 495 533 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2481 Psa-Chr3 211308990 211311776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2481 46 662 U-box Gene Family AT5G42340 61.912 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2481 - - cam:101489704 1045.42