Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2475 ATGTCGATCTTCGACGGAGCTTTCATCAACACACAGCTCTCCAAACACACATCGATCTTCGGTCTCCGTTTATGGGTTGTCATCGGAATCTTAATCGGTGTTGCCATCGTTTTCATCCTCTTCCTCATCTCCCTCTGCGTGGTTTCCCGCCGCCGCCAACGCCGTACTGGCGACTACAAAATCACCGGAGCTGCTCCTGCGAAGGAAATCCAACAGATCGTGCACATTCCAGGACCGCACATGCTCCGGCGACCAGCTCCGTCGAAAGTACCGGAGATCCACGTGGATATCGGGAGGCAAGAACACAGAGTGGTGGTTAAATCAGATAGGGTTTCAAGTGGTGAGAGTAAAGGAACAGCGGGAAGTGGGTGTGATACGACGTCGTCTTTTGGGAGTGGTAGTGTCGGTGGAATTGGACCTGAGGTATCACATCTTGGTTGGGGAAGATGGTACACTCTGAGAGAGCTTGAAGATGCAACTGGTGGGTTGTGTCCAGAAAATGTTCTTGGTGAAGGTGGCTATGGAATTGTTTATCATGGAGTACTCACGGATGGTACTAAAGTTGCTGTCAAAAATCTCTTGAATAACAAGGGCCAAGCGGAAAAAGAATTCAAAGTTGAGGTTGAAGCAATTGGTCGAGTACGTCACAAAAATCTTGTTAGGTTGCTTGGATACTGTGTTGAAGGGGCCTACAGGATGCTTGTGTATGAATACGTCAACAATGGCAATCTAGAACAGTGGTTGCATGGAGATGTTGGACCTGTAAGCCCTTTGACATGGGAAATACGCATGAACGTTATATTGGGAACAGCTAGAGGCTTGGCCTATCTTCATGAGGGTCTCGAACCGAAGGTTGTTCACCGAGATGTGAAATCAAGCAACATCCTCATTGATCGTCAATGGAACTCCAAGGTTTCTGATTTCGGGCTTGCCAAGCTTTTGTGTTCCGAGAATAGTTATGTCACGACTCGAGTAATGGGGACATTTGGTTATGTTGCACCAGAATACGCATGCACCGGAATGCTGACTGAGAAGAGTGATGTTTATAGCTTTGGGATACTTATCATGGAGATAATTACTGGGAGAAGTCCAGTTGATTATGCTAGACCACAAGGAGAGGTTAATTTAATAGAGTGGTTGAAAACTATGGTTGGTAATAGAAAAGCTGAAGAAGTAGTTGATCCTAAACTACCCGAGTTGCCATCTTCAAAGGCTCTTAAACGCGCTCTACTAATCGCCCTTCGGTGTGTTGATCCAGATGCAACAAAAAGGCCTAAAATGGGTCATGTCATTCACATGCTCGAGGCAGACGACCTGTTATTCCACAATGATCGCAAAACTGGAGGAGAGTCTTCGCGATCCTCCCTTCACGAATTTCAACAAGAGCACGAGAACTCAAGTCTGGACAAAAGAACAACAGATGAAGGAATCAGTGTTGAAAGTGAGCATGGTAGTGGTAGAAGTAATCACCAACCCACTAGGGGGAGATGA 1491 0.4641 MSIFDGAFINTQLSKHTSIFGLRLWVVIGILIGVAIVFILFLISLCVVSRRRQRRTGDYKITGAAPAKEIQQIVHIPGPHMLRRPAPSKVPEIHVDIGRQEHRVVVKSDRVSSGESKGTAGSGCDTTSSFGSGSVGGIGPEVSHLGWGRWYTLRELEDATGGLCPENVLGEGGYGIVYHGVLTDGTKVAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLEQWLHGDVGPVSPLTWEIRMNVILGTARGLAYLHEGLEPKVVHRDVKSSNILIDRQWNSKVSDFGLAKLLCSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYARPQGEVNLIEWLKTMVGNRKAEEVVDPKLPELPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDLLFHNDRKTGGESSRSSLHEFQQEHENSSLDKRTTDEGISVESEHGSGRSNHQPTRGR* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2475 496 Gene3D Transferase(Phosphotransferase) domain 1 239 447 - -
Psa3g2475 496 ProSiteProfiles Protein kinase domain profile. 163 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2475 496 ProSitePatterns Protein kinases ATP-binding region signature. 169 191 IPR017441 GO:0005524
Psa3g2475 496 Pfam Protein kinase domain 167 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2475 496 MobiDBLite consensus disorder prediction 482 496 - -
Psa3g2475 496 PANTHER BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1 488 - -
Psa3g2475 496 SUPERFAMILY Protein kinase-like (PK-like) 142 435 IPR011009 -
Psa3g2475 496 CDD STKc_IRAK 169 435 - -
Psa3g2475 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
Psa3g2475 496 PANTHER OS01G0323000 PROTEIN 1 488 - -
Psa3g2475 496 Gene3D Phosphorylase Kinase; domain 1 140 238 - -
Psa3g2475 496 MobiDBLite consensus disorder prediction 446 496 - -
Psa3g2475 496 MobiDBLite consensus disorder prediction 446 481 - -
Psa3g2475 496 SMART serkin_6 163 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2475 Psa-Chr3 211043345 211047424 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2475 26 471 Trihelix Transcription Factor Family AT5G38560 38.274 2.49e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Psa3g2475 Pkinase 7.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2475 - - gmx:100817295 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2475 3 211043345 211047424 Psa3g2475 3 211043345 211047424 ECH