Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2455 ATGCTAGAAACTTCACCATATTGTGATCACACCGCAAAACCAGTCTCAACAAAGGTTTGTTCAAAATCTGTTAAAATGCTGGTACAATTTGAAACGCCGGGGAGTTTCTCTCTTTTCAAAGTTCTCAATGAAGGAAAGCTTTCTGAAGTTCGGGATTTATCTCTGGATTTTTCCACTGCTGATGCTGCAGGAAAGGTGGTTAAGCTAAAAGCGTTTTCTAAGTTTGAGAATAACAGCAGTGAGCTCATTGATGATTCGCATGATATTAAGACCAGTAATAACACCAGCATCCTTGGTAGCTTGACACTGAGAATCATTAAAGTAAGCAAAGGAACACAAGAGGTACAAACCCAAGACATGGCGAAACTTGTCGGTATCCGCCTGAAGTTAATGTTCAAAGTAGAGAAACTATGTCAAATGGCTCTTGACATTCATAGAGCAAATAGTTCAGCATCATCAATCAATTTTAACGGTATGTCGGATGAGATTCTTGGGGAAGTTGCGATCCTAGTCTTCATGTTTTTCACATTGATGCTTAGAAGTTGGCATCAGCCCGGTAGTGATGGTTCCATGCCAAGACACAGTGGAACTACTGATGTTCATGATAAAAATTTAATGCATGGACAATCAAAACTTGATCCTTCTAGAGATAACTTGTTAGATCAGGTACAATTAAGGAGATATCTGTATGACTGGCAGCAGAATTCACATTCTTCAGGGCACCTTGATCCGTCGACAGAGCAGTTTATCCAAGCAAAATGGCTCTCAGTTGAAACGAGAACCGCGAGCGAAGAGGTTGCTACACTCTTGACATTTAACCATTCTGGTGCTCTGGCGGCTGAAACGAAAACCGCGCGGCAAGTTGGAACGACTGTCACAGTTAAAAAGCTGTTCTATAATCTTCTGGTGCGAAGCAAAGAGTTTAAGCGGAACATTCGCAAGGAATATGGCAAGTTGGTTTCTCTCTTGAATGCATATTCCCTTATTGCAAAAGTACCGGCTATTATTGATCGTATTCGAGATGGATTTATAAAAAAGGTTGAGGAAAAAGGGGGACTTGCCAAGAATCTTTTCCAGACTGCATACAATCATCGACTGGTTGCTGTCAAAGGAATCACAATTGTAGTTTTCGTAATGCCTGAAGGTCTACCTTTGGCTGTTACTTTAACCTTGGCATATTCAATACGGAAAATGATGAAAGATAAAGCCTTGGTACGAAGACTGTCATCCTGCGAAACTATGGGCTCTGCTACTACAATCTGTACTGATAAGACAGGAACATTAACCTTAAATCAGATGACTGTTGTTGAGGCATATGTTGGGAGGAACAATCTAATTCCACCAGATGACTCTTCAAAGTTTCATCCAGAAGCATTATCCCTGATAAATGAAATCATTGCACGGAATTCCACTGGAAATGTTTTTGTGTCTAAGGATGGTGGAGCGGTAGAGGTTTCAGGATCACCAACAGAGAAGGCGATTCTTTCATGGGCTGTCAAGTTGGGAGCTGCAAAAATAATTCTAGGAGCATGTAACCAATATCTTGATTCAAATGGTCATTTGCAAACCATCGAAGAACAAAAGGCTTTTTTTAAGGAGGCTATTGATGACATGGCTTCTCGCAGCTTGTGTTGCGTTGCCATTGCATACAGATCATATGAATTAGACCAAATTCCATCTAATGAGGAGGATTTAAACCAATGGATCCACAGATCATATGAATTAGACCAAATTCCATCTAATGAGGAGGATTTAAACCAATGGTCCTTACCAGAAGATGAGCTTGTTTTGCTTGCTATTGTTGGAATCAAGGATCCTTGTCGCCCTAGTGTCAAATATGCTGTGAGAATATGTACTGAAGCTGGTGTTAAGGTACGTATGGTTACCGAAGACAACCTTCAAACCGCAAAGGAAATAGCTCTGGAGTGTGGGATACTAGCTTCAAATGAAGATGTTGTTGAGCCAAATATAATTGAAGGAAAGGTATTTAGGGAGCTATCGGAACAAGAAAGGGAACAGTTGAGCAGAATGTGGGTCAACGGCAAACAGAACTGCCGGCATATTTGA 2067 0.4078 MLETSPYCDHTAKPVSTKVCSKSVKMLVQFETPGSFSLFKVLNEGKLSEVRDLSLDFSTADAAGKVVKLKAFSKFENNSSELIDDSHDIKTSNNTSILGSLTLRIIKVSKGTQEVQTQDMAKLVGIRLKLMFKVEKLCQMALDIHRANSSASSINFNGMSDEILGEVAILVFMFFTLMLRSWHQPGSDGSMPRHSGTTDVHDKNLMHGQSKLDPSRDNLLDQVQLRRYLYDWQQNSHSSGHLDPSTEQFIQAKWLSVETRTASEEVATLLTFNHSGALAAETKTARQVGTTVTVKKLFYNLLVRSKEFKRNIRKEYGKLVSLLNAYSLIAKVPAIIDRIRDGFIKKVEEKGGLAKNLFQTAYNHRLVAVKGITIVVFVMPEGLPLAVTLTLAYSIRKMMKDKALVRRLSSCETMGSATTICTDKTGTLTLNQMTVVEAYVGRNNLIPPDDSSKFHPEALSLINEIIARNSTGNVFVSKDGGAVEVSGSPTEKAILSWAVKLGAAKIILGACNQYLDSNGHLQTIEEQKAFFKEAIDDMASRSLCCVAIAYRSYELDQIPSNEEDLNQWIHRSYELDQIPSNEEDLNQWSLPEDELVLLAIVGIKDPCRPSVKYAVRICTEAGVKVRMVTEDNLQTAKEIALECGILASNEDVVEPNIIEGKVFRELSEQEREQLSRMWVNGKQNCRHI* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2455 688 Gene3D - 369 417 - -
Psa3g2455 688 PANTHER CATION TRANSPORTING ATPASE 370 502 - -
Psa3g2455 688 PANTHER CATION TRANSPORTING ATPASE 571 676 - -
Psa3g2455 688 PANTHER CATION TRANSPORTING ATPASE 501 569 - -
Psa3g2455 688 Gene3D - 418 430 IPR023214 -
Psa3g2455 688 PRINTS P-type cation-transporting ATPase superfamily signature 421 435 - -
Psa3g2455 688 PRINTS P-type cation-transporting ATPase superfamily signature 599 610 - -
Psa3g2455 688 PRINTS P-type cation-transporting ATPase superfamily signature 621 631 - -
Psa3g2455 688 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 427 611 IPR023299 GO:0000166
Psa3g2455 688 Gene3D - 602 685 IPR023214 -
Psa3g2455 688 PANTHER CALCIUM-TRANSPORTING ATPASE 9, PLASMA MEMBRANE-TYPE 501 569 - -
Psa3g2455 688 PANTHER CALCIUM-TRANSPORTING ATPASE 9, PLASMA MEMBRANE-TYPE 370 502 - -
Psa3g2455 688 PANTHER CALCIUM-TRANSPORTING ATPASE 9, PLASMA MEMBRANE-TYPE 571 676 - -
Psa3g2455 688 SUPERFAMILY HAD-like 418 647 IPR036412 -
Psa3g2455 688 Pfam NOP5NT (NUC127) domain 30 79 IPR012974 -
Psa3g2455 688 Gene3D - 502 601 IPR023299 GO:0000166
Psa3g2455 688 Gene3D - 244 350 IPR036890 -
Psa3g2455 688 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 252 331 IPR036890 -
Psa3g2455 688 Pfam haloacid dehalogenase-like hydrolase 418 656 - -
Psa3g2455 688 SUPERFAMILY Calcium ATPase, transmembrane domain M 367 415 IPR023298 -
Psa3g2455 688 Pfam NAD-specific glutamate dehydrogenase 77 124 IPR019651 -
Psa3g2455 688 ProSitePatterns E1-E2 ATPases phosphorylation site. 423 429 IPR018303 -
Psa3g2455 688 Gene3D - 431 443 IPR023299 GO:0000166
Psa3g2455 688 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 367 444 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2455 Psa-Chr3 208878820 208882265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2455 380 676 Primary Pumps ATPases AT3G21180 59.292 3.41e-124 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2455 K01537 - gmx:100802659 427.172