Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2448 ATGGAACAAGATTGGGATCTCCATGCGGTGGTTAGAGGTTGCTCCACCGTCACTTCCACCAACACACCCACACCCACACCCTCTGTTTCTTCTTCCTCCTCCTCTGTTTTCCCTCTCCAACCAGAACCTTCTTCTGCCTTCTCCTCTATCTTTACCACTGAACAAAAACCTCAAACTTTCTCACTTTCAACACACCCTTTTGAACTAAGAACCTCCATTGAAGAGTTGCATGAACTTTGCAAGCCTTTCTTTTCTAGATCAGAGCCTCTTTCTTTGCAAACTTCCCCTCTGTTTTCTTCATTCTCTTATTCCTCCTCTGTAGCACCGAAATTACCTCAAACACAAGACAAACAACAACTGCAACAGAGAACTAAACAATCACACCAGGGTGATTCTCTCACCAACCCAAGATCAAAAAGAAGGAAAAACCAGCTCAAGAAAGTTTGTCAAGTACCGGTTGAGAGTCTCTCTTCAGACATATGGGCATGGAGAAAATACGGACAAAAACCTATAAAAGGCTCACCATATCCAAGGGGTTATTATAGATGTAGCAGTTCTAAAGGTTGTTTAGCAAGAAAGCAAGTTGAAAGAAACAGATCAGATCCAACAATGTTCATAGTAACATATACATCTGAACACAACCATCCTGCTCCAACACACAAAAACTCTCTCGCCGGTTCATCTCGGCAGAAGCCATTAACGCCACCTCAAGGTGAAACAACAAGCAAAGATCTTACAAAACCACCCTCTTCTCCAGAAGACGAAGACGTTCAAAAGTCCGACAGCAAGGAAGATTCTTTGATGGATGACGAAGAAGGAGGAGGAGAAGATGAGTTTGGTTTATCTGAGGTTGTTTTGACAGATGATTTCTTTGAGAGTTTAGATGAACTGAGTCAACTCGGTGGCTCTGGAGATTGTTTCATAGATCCATTTTCTTCTGCCATTGGAATTCCTAACTGGGCTGCTGCCACAGCTGCAGGTGGTAGCTGA 990 0.4323 MEQDWDLHAVVRGCSTVTSTNTPTPTPSVSSSSSSVFPLQPEPSSAFSSIFTTEQKPQTFSLSTHPFELRTSIEELHELCKPFFSRSEPLSLQTSPLFSSFSYSSSVAPKLPQTQDKQQLQQRTKQSHQGDSLTNPRSKRRKNQLKKVCQVPVESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTSEHNHPAPTHKNSLAGSSRQKPLTPPQGETTSKDLTKPPSSPEDEDVQKSDSKEDSLMDDEEGGGEDEFGLSEVVLTDDFFESLDELSQLGGSGDCFIDPFSSAIGIPNWAAATAAGGS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2448 329 MobiDBLite consensus disorder prediction 16 37 - -
Psa3g2448 329 MobiDBLite consensus disorder prediction 248 266 - -
Psa3g2448 329 MobiDBLite consensus disorder prediction 109 148 - -
Psa3g2448 329 MobiDBLite consensus disorder prediction 212 247 - -
Psa3g2448 329 SUPERFAMILY WRKY DNA-binding domain 156 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa3g2448 329 MobiDBLite consensus disorder prediction 109 133 - -
Psa3g2448 329 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 329 - -
Psa3g2448 329 ProSiteProfiles WRKY domain profile. 152 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g2448 329 Pfam WRKY DNA -binding domain 159 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa3g2448 329 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 329 IPR044810 GO:0003700
Psa3g2448 329 Gene3D WRKY domain 141 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa3g2448 329 MobiDBLite consensus disorder prediction 212 282 - -
Psa3g2448 329 SMART WRKY_cls 157 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2448 Psa-Chr3 208140583 208142462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2448 1 328 WRKY Transcription Factor Family AT4G01250 45.697 1.15e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa3g2448 WRKY 2.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2448 K13425 - gmx:100170675 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2448 3 208140583 208142462 Psa6g4466 6 391533094 391535039 ECH
Psa3g2448 3 208140583 208142462 Psa3g2448 3 208140583 208142462 ECH
Psa4g3640 4 305536081 305538160 Psa3g2448 3 208140583 208142462 ECH
Psa7g0680 7 46697717 46699375 Psa3g2448 3 208140583 208142462 ECH
Psa3g2448 3 208140583 208142462 Psa4g3640 4 305536081 305538160 PCT