Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2446 ATGGAGTTTCCTTACCTTTACATTCTCTTATTTCTGTTTCCATACTCAGTTAACTGCCAACAGTTATACCTTAACACCACTGTCACTGATTGCTCAGACAACCCTTCAGCGCCAAAAGGATACCTATGTAATGCCCCTCAAAGGTCATCGTCATGCAATTCATTCTTAGTTTTCAGGTCCAAACCTCCTTATGACAATCCTATAACTATGGCATACCTTCTTGGATCTGAAGCATCAACCATAGCTTCAATCAACAACATCTCAAGAGATACCAAGCTTCCTTCCAATAAAACAATCATTGTCCCTACCCTTTGTTCATGTTCTGGAAATATCTACCAACATAACACCCCTTACACTGTCAAAAAAGCCGATACCTACTTTCAATTGGTAAATGCAACTTACCAAAGCCTCACAACATGTCAGGCTTTAAAGGGTCAGAATTACTATGCTTCTGTAAACATTGCAATTGGTGCTGAGCTCACAGTTCCAGTACTTTGTGCTTGTCCTACGACAAAACAGATGGCGAAAGGGATCACCTCCTTGCTGGTTTACACAGTGGACTATGGTGAAACTGTTGAATCTATAGCAGAGGCATATGGTGTTGATGAACAAAGTATACTAGAAGCAAATGAGTTGCAAGTGTCAGCAAGTGAAAACAGAAGGGTGATCCTTTTTGCCTTGACACCTATATTGGTTCCTCTTAGAGGAAAGAGTTGCAAAGAGGATCCTGATAGTTTCTATTGTACTTGCTCTCAAGGAAGGCTTGCAGACGGAAGCTGTAATGAATCTCATGGTCAAAAGTTTCCTGCCAAATTGGTTGCTGCATTAGGGGTTGGAATTGGCGTGGCCTTTCTGGTTTTGTTTCTTGTGGGTTACAAGTTATATCAATATATACAGAAAAGAAGAGCGAGTATTCGTAAGGAAAAGCTATTCAGACAAAATGGTGGCTACTTGTTACAAGAGAAGTTATCATCTTACGGAAATGGAGAAATGGCAAAGCTTTTTACAGGAGAGGAGCTTCAAAGAGCAACCGATAACTACAGCCCGAGTAGGTTTCTCGGCCAGGGTGGTTATGGCACGGTGTACAAAGGAATGTTACCAGATGGAACCATAGTAGCAGTTAAAAAGTCGAAACAGCTTGACAGGAACCAAGTAGAAGCTTTTGTTAATGAAGTGGTCATCTTATCTCAAATCAACCACAGAAACATTGTTAAACTCCTAGGATGTTGTCTTGAGACAGAAACTCCATTACTTGTCTATGAATATATTAATAACGGAAATCTCTCACAGCATATACATAGGAAAGACAATGAATCACCCCTTTCATGGGAAATTCGCCTTCGAATTGCATGTGAAATTATAACGGGTAGAAAGCCAATCACATTCAATGATGAAGATGAGGGACAAAATATGACTGCGCATTTCCTTTCTGCGATGAAAGACAACCAACTTTCTCTTGTTGTAGACAAGACAGTGCTTAAGGAAGCAAGAAAAGATGACATTCTTGGTATTGCAAATCTTGCAATGAGGTGTTTGAGACTTAATGGTAAGAAAAGACCAACAATGAAAGAGGTTTCAGCTGAATTAGAAGCACTGAGGAAGGTGCAAAGTTTTGTATGTATCAAAGATGATGGGAAGAAACCAAGTGATGGACAATTCTTTGAGCATTCAACTAATGATATATTTCAGGAGTCCACAGTGGAAAGCTTTTCAATATCCTCTCAAATGGAGTCTACATCCTTCTAA 1746 0.3975 MEFPYLYILLFLFPYSVNCQQLYLNTTVTDCSDNPSAPKGYLCNAPQRSSSCNSFLVFRSKPPYDNPITMAYLLGSEASTIASINNISRDTKLPSNKTIIVPTLCSCSGNIYQHNTPYTVKKADTYFQLVNATYQSLTTCQALKGQNYYASVNIAIGAELTVPVLCACPTTKQMAKGITSLLVYTVDYGETVESIAEAYGVDEQSILEANELQVSASENRRVILFALTPILVPLRGKSCKEDPDSFYCTCSQGRLADGSCNESHGQKFPAKLVAALGVGIGVAFLVLFLVGYKLYQYIQKRRASIRKEKLFRQNGGYLLQEKLSSYGNGEMAKLFTGEELQRATDNYSPSRFLGQGGYGTVYKGMLPDGTIVAVKKSKQLDRNQVEAFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEYINNGNLSQHIHRKDNESPLSWEIRLRIACEIITGRKPITFNDEDEGQNMTAHFLSAMKDNQLSLVVDKTVLKEARKDDILGIANLAMRCLRLNGKKRPTMKEVSAELEALRKVQSFVCIKDDGKKPSDGQFFEHSTNDIFQESTVESFSISSQMESTSF* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2446 581 ProSiteProfiles Protein kinase domain profile. 347 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2446 581 ProSitePatterns Protein kinases ATP-binding region signature. 353 376 IPR017441 GO:0005524
Psa3g2446 581 ProSiteProfiles LysM domain profile. 182 229 IPR018392 -
Psa3g2446 581 Gene3D Transferase(Phosphotransferase) domain 1 322 453 - -
Psa3g2446 581 Gene3D LysM domain 170 241 IPR036779 -
Psa3g2446 581 CDD LysM 183 212 IPR018392 -
Psa3g2446 581 Pfam Protein tyrosine and serine/threonine kinase 351 456 IPR001245 GO:0004672|GO:0006468
Psa3g2446 581 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 453 IPR045274 GO:0007166
Psa3g2446 581 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 452 565 IPR045274 GO:0007166
Psa3g2446 581 Pfam LysM domain 184 214 IPR018392 -
Psa3g2446 581 Gene3D Transferase(Phosphotransferase) domain 1 454 548 - -
Psa3g2446 581 SMART LysM_2 117 163 IPR018392 -
Psa3g2446 581 SMART LysM_2 183 233 IPR018392 -
Psa3g2446 581 PANTHER LYSM TYPE RECEPTOR KINASE 21 453 - -
Psa3g2446 581 PANTHER LYSM TYPE RECEPTOR KINASE 452 565 - -
Psa3g2446 581 SUPERFAMILY Protein kinase-like (PK-like) 334 536 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2446 Psa-Chr3 208038149 208040244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2446 429 533 Receptor kinase-like Gene Family AT1G16120 38.095 5.35e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Psa3g2446 PK_Tyr_Ser-Thr 3.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2446 - - mtr:MTR_7g079350 784.252