Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2427 ATGGAGGAATCATTGGAGAATCTGATTTCTTATATGGAAATGGAAGATGAAGTGATGAATCAAAGTACTAACTCATTTGATGAGCAAGAGTTTCTCAAAGATATCATCCTTGAGAAACCAGAATGTGAACCTTTTTCTTATCTTTGTTCCAATGAAACCCAAAACAATAGTTCAATTTCTGCAGGAAATATTAATATGGAAGGTGGTGTTACAAGTCCCACAAATAGTATTCTGTCCTTTGATCACGAGAATATTGAAGCAATCCACAAAAGTTTTAGTTCAAACTCGATAATTTCTTTGGAAAGATCATGTGCTGGTTCTCCAGCTACATATCTTTTATCTTTTGGTAATTCAAGTATTGAACCGATTATCGAACCAATGTCACATAAAAGAAAGAGTGCGAAGAAAGATGAAAAAAAGACGAAGGAAGCAACAAAGAGGGTTAGAAGTTCTTGTGAGACAGTGCAAGATCACTTGATGGCTGAGAGGAAAAGGAGAAGGGAATTGACTGAGAGTATTATAACACTTTCAGCTATGATACCTGGCTTGAAAAAGATGGACAAGTGCTATGTACTTAGTGAAGCTGTGAGTTACACAAAACAGCTTCAGAAAAGAATTAAAGAATTGGAGAATAATAAAAAAAAAGATAATACAGTAAATCCAGAAATATTCAAGTGGAAATCTCAAGCTTCATCAAATAAAAGGAAGTACTCAGAATCACTGCTTGAGGTTGAAGCTAGAGTCATGAAAAAGGAAGTACTGGTTAGAATTCATTGTGAGAAGAAAAAGGACATAGTGCTCAAAATACATGAATTGCTTGAAAAGTTCAATCTCACTATAACCAGTAGTAGCATATTGCCATTTGGTCCTTCAGTTCTTGTAATTAACATTTTTGCTCAGATGGATGAAGAAGACAGCATGAGGATGGATGAGCTGGTGAAAAATCTGACAAAATATCTGTTGGAGGTATGTGGGAGTCAATAG 984 0.3516 MEESLENLISYMEMEDEVMNQSTNSFDEQEFLKDIILEKPECEPFSYLCSNETQNNSSISAGNINMEGGVTSPTNSILSFDHENIEAIHKSFSSNSIISLERSCAGSPATYLLSFGNSSIEPIIEPMSHKRKSAKKDEKKTKEATKRVRSSCETVQDHLMAERKRRRELTESIITLSAMIPGLKKMDKCYVLSEAVSYTKQLQKRIKELENNKKKDNTVNPEIFKWKSQASSNKRKYSESLLEVEARVMKKEVLVRIHCEKKKDIVLKIHELLEKFNLTITSSSILPFGPSVLVINIFAQMDEEDSMRMDELVKNLTKYLLEVCGSQ* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2427 327 MobiDBLite consensus disorder prediction 129 148 - -
Psa3g2427 327 SMART finulus 159 208 IPR011598 GO:0046983
Psa3g2427 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 217 IPR036638 GO:0046983
Psa3g2427 327 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 4 324 - -
Psa3g2427 327 Pfam Helix-loop-helix DNA-binding domain 157 203 IPR011598 GO:0046983
Psa3g2427 327 PANTHER BHLH TRANSCRIPTION FACTOR 4 324 - -
Psa3g2427 327 Gene3D - 152 216 IPR036638 GO:0046983
Psa3g2427 327 Coils Coil 192 219 - -
Psa3g2427 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2427 Psa-Chr3 206041268 206043513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2427 149 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 37.500 1.46e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa3g2427 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2427 - - aprc:113863851 305.064