Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2407 ATGGTACTATCAATGAGGGGTTCGACTGTTTATCCTACTGTCCAATCTCCAACTACACCAGGTCAGCAGTCATATGCCGCAGGAATTACAAATTGGTCTAGTTCATCCTATGTTCCTAGTCCAAGGTGGCAAGGTCCTTCAAGTTATGCACCCTTAATTCTACCTCAAGGAGTGGTTTCAGTGCCTGGGTGGAGTACATACGGTGGTCAAATGGGATCAGAAAGTCCACAACAAACAATGAGAAATGATCAAACCTATGGAACTTCTCACCAAGGTGAATTAGAAAATGCAGGACTCCAAGGGGCATATTCTCAATACCGTTCTGGCTCTGTTCCAGTAGGATTCTATGCTTTGCAAAGGGATAACATTTTTCCAGAGAGACCTGATCAGCCCGAATGCCAATTCTACATGAAGACCGGAGATTGCAAGTTCGGTGCAGTTTGTCGTTTTCACCACCCACGAGAGAGGCAGATCCCTGCCCCTGATTGTGTTTTGAGTCCCATTGGCCTTCCTTTGCGTCCTGGAGAACCTCTTTGTGTATTCTACTCACGGTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGATCATCCAATGGGAATTTTCACCTATAATGTTGCATCACCTTTAGCCGATACCCCAGGCCGGCGTCTATTAGGCTCTTCATCAGGAACTGCTGCACTAAGTTTATCATCAGAAGGACTTGTTGAGTCGGGGACAGCAAAGCCAAGGAGGCTTTCATTATCAGAGACTAGACCTATTCCTCCCGGTGATGATAACATTGATGACGAGGGATAA 801 0.4582 MVLSMRGSTVYPTVQSPTTPGQQSYAAGITNWSSSSYVPSPRWQGPSSYAPLILPQGVVSVPGWSTYGGQMGSESPQQTMRNDQTYGTSHQGELENAGLQGAYSQYRSGSVPVGFYALQRDNIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNVASPLADTPGRRLLGSSSGTAALSLSSEGLVESGTAKPRRLSLSETRPIPPGDDNIDDEG* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2407 266 SUPERFAMILY CCCH zinc finger 130 155 IPR036855 GO:0046872
Psa3g2407 266 MobiDBLite consensus disorder prediction 232 266 - -
Psa3g2407 266 Gene3D - 119 202 - -
Psa3g2407 266 ProSiteProfiles Zinc finger C3H1-type profile. 173 201 IPR000571 GO:0046872
Psa3g2407 266 SUPERFAMILY CCCH zinc finger 176 200 IPR036855 GO:0046872
Psa3g2407 266 MobiDBLite consensus disorder prediction 1 22 - -
Psa3g2407 266 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 154 IPR000571 GO:0046872
Psa3g2407 266 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 175 200 IPR000571 GO:0046872
Psa3g2407 266 MobiDBLite consensus disorder prediction 8 22 - -
Psa3g2407 266 SMART c3hfinal6 173 200 IPR000571 GO:0046872
Psa3g2407 266 SMART c3hfinal6 127 154 IPR000571 GO:0046872
Psa3g2407 266 ProSiteProfiles Zinc finger C3H1-type profile. 127 155 IPR000571 GO:0046872
Psa3g2407 266 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 2 265 - -
Psa3g2407 266 PANTHER PROTEIN PHOSPHATASE RELATED 2 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2407 Psa-Chr3 204611654 204616221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2407 12 253 C2H2 Transcription Factor Family AT3G02830 58.130 3.16e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa3g2407 zf-CCCH 2.8e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2407 - - gmx:100786261 477.248