Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2393 ATGGCTTCTATGAACTTGTTAGGTTTCTCTCTCTCACCACAAGAACAACACCCATCTTCTACTCAAGATCAAACGGTGGTTCCTTCTCTTTTTGGTTTCAACCCTCACGATGATGGTTCTGGTGTTCAACAAGGAGATCACTGCTTTGATCTCACTTCTCACTCTTCAAATCCTCATCATCATCATTCACTCAACCACCTTTCTCATCCTTTTTCCATCTATGAAGCTTTCCACACAAATAACAACATTCATACCACTCAAGATTGGAAGGAGAACTACAACAACCAAACACTACTACTAGGAAGTTCATGCATTAACCAAAATGTGAACAATACTCATCAACAGGTGCAACCAAAGCTAGAAAACTTCCTTGGTGGAAACTCTTTCTCCGATCATCAAAATGAATACGGTGGCAACAACAACTCATACTCTTCGTTACACCTTCCGGCTACTCAACCGGAACCATCTTGTGGCGGCGGTGCTGCTGGTGGCGGTGATGATAGCACAAATAACAACAATAATAACTCCATAGGTTTATCAATGATAAAAACATGGCTGAGAAACCAGCCTCCACCAGAAAACAACAACAACGAAAGTGGAGCAGCACGTGTGCAGACACTATCACTCTCCATGAGTACTGGTTCACAGTCAAGCTCTTCGGTGCCTCTTCTCAATGCAAACGCCATGAATGGTGAGATTTCATCGTCGGAAAACAAACAACCACCAACAACTGCTGTAGCACTTGATAGCAACCAAACCGGCGCTGTCGTTGAAAGTGCTGCGCCTAGAAAATCCATTGATACCTTCGGACAAAGAACTTCCATTTACCGCGGTGTAACAAGGCATAGATGGACAGGAAGATATGAAGCTCATCTTTGGGATAACAGTTGCAGAAGAGAGGGACAAACTCGCAAAGGAAGACAAGTTTACTTGGGAGGTTATGACAAAGAAGAAAAAGCAGCTAGAGCCTATGATTTAGCAGCACTAAAATACTGGGGAGCAACTACAACAACAAATTTTCCTATAAGCCATTATGAAAAAGAATTGGAAGAAATGAAACACATGACAAGACAAGAGTATGTTGCGTCATTGAGAAGGAAAAGTAGTGGTTTTTCTCGCGGTGCATCCATTTACCGAGGAGTAACTAGACATCATCAACATGGTAGATGGCAAGCAAGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTACCTAGGAACTTTCAGCACTCAAGAAGAGGCAGCGGAGGCATATGATGTAGCAGCCATAAAATTCAGAGGACTAAGTGCAGTTACAAATTTTGACATGAGCCGATACGACGTGAAAACCATACTCGAGAGCAGCACTTTACCGATCGGTGGTGCTGCAAAGCGTTTGAAAGATATGGAGCAAGTTGAGTTATTGAGTGTGAATGTGGTGGATAATATTGGCCAAGATCATCATCGTCAGAGCATCATCCATAATAATGCTACTAATTCCCATTTAACAGATCAAACCATCAATAACTATGCAGCAGCTAATTGGCAGGCTCTTTCATTCCAACAACAGCAACACCCTTACAATACCAACAACATGCAGTTACAGCAGTATCCTTATGGTGCACAGACTCAAACTCAGAAGCTTTGGTGCAAACAAGAACAAGATTCTGATGATCATAATACTTATACTACTACTACTACTGATCATCATATTCATCATCAACATCTACAGTTAGGGAATAACAACAATAACAATAACACTCATAATTTCTTTGGTTTGCAAAATATCATGAGTATGGATTCTGCTTCCATGGATAATACTTCTGGTTCAAATTCTCTTGTTTATGGTGGTGGAGATCATGGTGGCTATGGAGGAAACGGCGGATATATGATTCCAATGGCTACTACTACTGTTATTGGAAATGATGGTAGTAATAACCAAAATCAAAGAAGCAGCAATAACAGTTTTGGTGATAGTGATCAGATAAAAGGATTTGGTTATGAGAATGTTTTTGGAGCTAGTGATCCTTATCATGCACATGCAAGAAATTTGTACTATCAGCAGCAACAGTTATCTGTTGATGAAGGATCAAACTGCAATAACAATAATAATTGGGTTCCAACTGCTATTCCAACACTTGCACCAAGGACTGCCAATGTGTCTCTTTGTCCACCTTTCAATTTGTTGCATGAATAG 2175 0.4078 MASMNLLGFSLSPQEQHPSSTQDQTVVPSLFGFNPHDDGSGVQQGDHCFDLTSHSSNPHHHHSLNHLSHPFSIYEAFHTNNNIHTTQDWKENYNNQTLLLGSSCINQNVNNTHQQVQPKLENFLGGNSFSDHQNEYGGNNNSYSSLHLPATQPEPSCGGGAAGGGDDSTNNNNNNSIGLSMIKTWLRNQPPPENNNNESGAARVQTLSLSMSTGSQSSSSVPLLNANAMNGEISSSENKQPPTTAVALDSNQTGAVVESAAPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGATTTTNFPISHYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKTILESSTLPIGGAAKRLKDMEQVELLSVNVVDNIGQDHHRQSIIHNNATNSHLTDQTINNYAAANWQALSFQQQQHPYNTNNMQLQQYPYGAQTQTQKLWCKQEQDSDDHNTYTTTTTDHHIHHQHLQLGNNNNNNNTHNFFGLQNIMSMDSASMDNTSGSNSLVYGGGDHGGYGGNGGYMIPMATTTVIGNDGSNNQNQRSSNNSFGDSDQIKGFGYENVFGASDPYHAHARNLYYQQQQLSVDEGSNCNNNNNWVPTAIPTLAPRTANVSLCPPFNLLHE* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2393 724 CDD AP2 376 437 IPR001471 GO:0003700|GO:0006355
Psa3g2393 724 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 631 - -
Psa3g2393 724 ProSiteProfiles AP2/ERF domain profile. 275 341 IPR001471 GO:0003700|GO:0006355
Psa3g2393 724 SMART rav1_2 377 441 IPR001471 GO:0003700|GO:0006355
Psa3g2393 724 SMART rav1_2 275 347 IPR001471 GO:0003700|GO:0006355
Psa3g2393 724 SUPERFAMILY DNA-binding domain 376 437 IPR016177 GO:0003677
Psa3g2393 724 Gene3D AP2/ERF domain 377 437 IPR036955 GO:0003700|GO:0006355
Psa3g2393 724 Gene3D AP2/ERF domain 275 343 IPR036955 GO:0003700|GO:0006355
Psa3g2393 724 Pfam AP2 domain 275 333 IPR001471 GO:0003700|GO:0006355
Psa3g2393 724 Pfam AP2 domain 377 427 IPR001471 GO:0003700|GO:0006355
Psa3g2393 724 ProSiteProfiles AP2/ERF domain profile. 377 435 IPR001471 GO:0003700|GO:0006355
Psa3g2393 724 SUPERFAMILY DNA-binding domain 274 343 IPR016177 GO:0003677
Psa3g2393 724 CDD AP2 274 343 IPR001471 GO:0003700|GO:0006355
Psa3g2393 724 PRINTS Ethylene responsive element binding protein signature 276 287 IPR001471 GO:0003700|GO:0006355
Psa3g2393 724 PRINTS Ethylene responsive element binding protein signature 417 437 IPR001471 GO:0003700|GO:0006355
Psa3g2393 724 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 5 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2393 Psa-Chr3 203734325 203737972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2393 176 630 AP2-EREBP Transcription Factor Family AT5G17430 52.381 1.82e-134 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Psa3g2393 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2393 K09285 - gmx:100797584 785.023