Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2344 ATGAAGATGGTTTTGAGTAGGGTTTCTGTTATTGTTAATTTCTTTCTGCTGATGAGTTGTTTCATCATGACCTATGGTACTGAGAGTGACATATTATGCTTAAAAAGAGTAAAAGAAACACTTAAAGACCCAAACAATTACTTGCAATCTTGGAATTTCGACAATAGAACTGAAGGGTTTATTTGCAAGTTCACTGGTGTTGAATGTTGGCATCCTGATGAAAGTAGGGTTTTGAATCTCAAGCTTTCGAATATGGGACTTAAGGGAGAGTTTCCTCGTGGCATTCAAAATTGCTCGAGTTTAACAGGATTAGATCTTTCATTGAACAGTCTCTCCAAAACAATTCCAGATGATATATCTAGCCTTGTTGGATATGTGGTCACTCTTGATCTATCTTCGAATGATTTTACGGGAGAGATTCCTGTGTCGCTTTCTAATTGTACCTATCTTAATACTCTTAGACTCGATCAAAACCAATTCACTGGTCAAATTCCTCTACAATTTGCTTCATTGACGCGGATTAAGACGTTTAGTGTTTCGAATAATCTTTTGTCCGGACAAGTTCCGAATTTTAAGGAGGGTATAGTTACAAAAGATAATTATGCAAATAACTCAGCACTCTGCGGCGGTCCGTTGGATGCTTGCAGTGGGTCTTCGAAGACTAACACTGCGGTTATAGCCGGAGCAGCTGTTGGTGGTATCACTCTTGCAGCTTTAGCAGTGGGCGTTGCAATGCTTTTCTATGTGCGACATCTTTCGCACAGGAAAAAGGAAGAAGATCCCGAAGAAAACAAGTGGGCGAGAATCATAAAGGGAACCAAAAAAATTAAGGTTTCGATGTTTGAGAAGTCGATTTCGAAAATGAGCTTGAGTGATCTCATGAAGGCTACGAATAACTTCAGCAAAAGCAATGTCATTGGGACAGGAAGATCAGGAACGGTATACAAAGCTGTCCTCGGCGACGGCACATCACTCATGGTTAAGAGATTGCTGGAATCTCAACACTCAGAGCAAGAGTTTACGGCTGAGATGGCTACACTAGGAACAGTGCGACATCGAAACTTGGTTCCTCTTTTAGGTTTTTGCCTCGCCAAAAAGGAAAGACTTTTGGTCTATAAGAATATGCCAAGCGGTACTCTTTACGACCAACTACATCCTGAAACTGGCGAATGCGCTATGGAGTGGTCTACAAGGCTCAAAATCGCAATCGGAGCAGCCAAAGGATTCGCGTGGCTTCATCACAACTGCAATCCGCGTATCATCCACCGAAACATAAGCTCTAAGTGCATCTTATTGGACGCGAATTTCGAGCCGAAAATCTCCGATTTCGGCCTTGCCAGATTAATGAACCCGATCGATACTCATTTGAGTACTTTTGTAAACGGCGAGTTTGGTGATTTAGGCTACGTTGCTCCCGAGTATACAACAACTCTGGTGGCTACACCTAAGGGCGATGTTTACAGCTTTGGAACTGTGCTTCTCGAGCTGGTAACCGGCGAAAGACCTACACATATTGCGAAAGCTCCAGAAACTTTTAAAGGAAACTTGGTAGAATGGATCATGCAGCTATCAGTAAACTCAAGCCTAAAAGAAGCAATCGATGAATCACTAACTGGAAAAGGTGTCGATCATGAACTTTTTCAGTTTCTTAAGGTTGCATGCAACTGTGTTACTTCAACTGCAAAGGAGAGGCCGACGATGTTCGAAGTATATCAGTTTCTAAGAGAGATTGGAAGTAAATATAATTTCATAACAGAGGACGAGATAATGGTGCTTACAGAAAACGGCGATGCTGGTAAATTGGAAGAACTTATCGTTGCGCGCGAGGCGTAA 1833 0.4195 MKMVLSRVSVIVNFFLLMSCFIMTYGTESDILCLKRVKETLKDPNNYLQSWNFDNRTEGFICKFTGVECWHPDESRVLNLKLSNMGLKGEFPRGIQNCSSLTGLDLSLNSLSKTIPDDISSLVGYVVTLDLSSNDFTGEIPVSLSNCTYLNTLRLDQNQFTGQIPLQFASLTRIKTFSVSNNLLSGQVPNFKEGIVTKDNYANNSALCGGPLDACSGSSKTNTAVIAGAAVGGITLAALAVGVAMLFYVRHLSHRKKEEDPEENKWARIIKGTKKIKVSMFEKSISKMSLSDLMKATNNFSKSNVIGTGRSGTVYKAVLGDGTSLMVKRLLESQHSEQEFTAEMATLGTVRHRNLVPLLGFCLAKKERLLVYKNMPSGTLYDQLHPETGECAMEWSTRLKIAIGAAKGFAWLHHNCNPRIIHRNISSKCILLDANFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTTTLVATPKGDVYSFGTVLLELVTGERPTHIAKAPETFKGNLVEWIMQLSVNSSLKEAIDESLTGKGVDHELFQFLKVACNCVTSTAKERPTMFEVYQFLREIGSKYNFITEDEIMVLTENGDAGKLEELIVAREA* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2344 610 Pfam Leucine rich repeat N-terminal domain 28 70 IPR013210 -
Psa3g2344 610 CDD STKc_IRAK 306 577 - -
Psa3g2344 610 SUPERFAMILY L domain-like 27 191 - -
Psa3g2344 610 PANTHER LRR RECEPTOR-LIKE KINASE 8 588 - -
Psa3g2344 610 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Psa3g2344 610 Gene3D Transferase(Phosphotransferase) domain 1 375 595 - -
Psa3g2344 610 Pfam Protein tyrosine and serine/threonine kinase 303 574 IPR001245 GO:0004672|GO:0006468
Psa3g2344 610 PANTHER RECEPTOR-LIKE PROTEIN 55 8 588 - -
Psa3g2344 610 ProSiteProfiles Protein kinase domain profile. 300 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2344 610 Gene3D Ribonuclease Inhibitor 27 217 IPR032675 -
Psa3g2344 610 Gene3D Phosphorylase Kinase; domain 1 262 373 - -
Psa3g2344 610 SUPERFAMILY Protein kinase-like (PK-like) 277 574 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2344 Psa-Chr3 201855165 201858193 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2344 15 588 Receptor kinase-like Gene Family AT3G28450 45.533 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Psa3g2344 PK_Tyr_Ser-Thr 1.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2344 - - gmx:100817267 937.176