Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2309 ATGCCTCCGAAGGTGGTAAAAAGAGGCGCTGCTGCGAAGAAAGCGACTCTTTCTTCAAAAACTGCAATTCAGAATCAGAAGCAAGAACCTGAACCTGAACCTGTGAAGAATCATGAAGTTCCTGTTGCTGATGTTGTGGCGGAAGATAATCCCGTTGAAACAAACAATCTGGCTCCAGAAATAGTGCCTAATGGTTTGGCTGCGATGGAAAGTACAGACAATGGGGAGGAGGAGGTTAAGGACTCCATAGATGAATGTGAAAAAGATGAACACTTAGATTTGGAGGATAATTATCATGAGTCTGATCCTGAAGAGTATGTCGGTGATGACTATGATGAGAGGGAGAATGAACAAGACGATGGTCAGGAGGTCGGAGATGAAGTAGAGGAAGAACTTGAAGAGATAGTGGATGAAGAAGATGGTGATACTGGCGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGGTGATGATGATGATGATTCTGCTGTTGGTGATGATGATGATTCTGCTGTTGGTGATGATGATGATCATGCTGGTACGGAGAACGAGCATGAGCATCTGGCTGATGTGGCTGAAGAGGGGCAAGGTGAAGTTAGAAAGGAACAGCATAAGCAGAAGGAGTTTGAAGTATTTGTTGGGGGCCTAGACAAGAATGCAACGGAGCATCATCTGAGGAAGATTTTCGGTAAAGTTGGGAAGATTACTGAGGCCAGGCTAATGATGAATCCTCAGAATAAAAGGAACAAGGGATTTGCATTATTGCGTTTCGAAACTGTTGAACAAGTGAAAAGAGCATTGGCAGAGCTAAAAAATCCAGTGATTAATGGAAAACAATGCGGTATCACTCCATGTCAGGACAATGATACTCTCTATTTAGATAACATTTGCAAGACATGGAAAAAGGAAGCTTTAAAGGAGAAATTGAAACATTATAAAGTTGAAAGTTTCAAGGATTTGACTTTAGTAGAAGATGGTAGCAATGAGGGAACAAACTGTGGGTTTGCGCTTTTGGAATTTTCATCACATTCAGATGCTAAGGAAGCCTATAAGCGATTGCAGAAGACAGATGTTGTTTTTGGAGTTGATAAGCCTGCTGAGGTTTCCTTTGCTGACTCCTTTGATGACCTGGAAGATGATATTACCGCACAGGTTAAAACTGTATTTATTGATTTACTGCCTCCTTCATGGGGTGAAGATTATGTTCGAGGTCTTCTTAAGAAATATGGGGAGGTTGAAAAAGTTGAGCTTGCTAAGAACAGGCCAGCTGCTCGCAGGAAGAATTATGGATTTGTTACGTTTGCTACACATGCTGCTGCTGTTGAATGTGCTGAGAGTATTACAGGTTCAGGGTTAGGCGACGGCAACAAAAAGGCAAAAGTTAGGGCTAGGTTGTCGAGACCTTTTCAGAAAGTTCGTGTAAAACATGTTACTCATAGTGACCTTTCTGGCCGCAAGTTTCGAAGGTCGGCAAGGCCTTCACGGAGTCGACCTTCACTGCGGAGTCGACCTGCACTACGGAGTCGCCTTGGGCCACCAAGTCGTCCTACAATACAGAGTCGACTTGGACCACCAAGTCGACCTGCACTTCAGAGTCGACTTGGACCACCAAGTCGATCTGCTCGTGTGATGAGGAGACTTGGAAACAGTATCCCACCAGTTAGGCCTTCTAGTGCGAGAAATAGACGTCCTGTCTCATCAGTGCCAGTAAGAGCTAGGCCAGCCACTCCTCCAGCTAGATCCCATGAGAGATTGACAGCTGCATATCCAAAAAGTAGCAGCATGAAGAGAGATTATGGTCGACCTGTGGATCTGCCACCTCCAAGAAGTAGAGTTTCTGCAGATTATGGCTCTCAGGCGGCCTCTCAAAGACATTCATCTTATAGAGATTATCCAGCCCGTGACTCTGGCTACTCTGATCTGCATAGGAATGCGTCTCGTACTGCACCAAGGAGGGATCATCTAGATGAAATCTTTGATCAAAGACTTGAAAGGTCTCCTCCTCCTCCCCATCTAAGTTATCGTGAAGGGCGCCCACATGATTATGACACACTATCTGGCTCAAAACGTCCTTATGCTGCCATGGATGATATTTCTCCACAGTATGCTGATCCTGATGCTCGCCAATCAAGATCTCGATTAGACTATGACTACGGAGGCAGTGTTTCACAATATAGAGAGTCTTATGGTGATAGGCATGGAAGATCTAGTTTGGGATATAATAGTGGCAGTAGAAGTTCTAGTTCTATTCAAAACTCACATGGGGCGTATAGCAGTCGACAGGACATGAGTTATGGTAGAGGTTCTATTGGCGCTAGTGATGGGGGTATCTACTCATCAAGTTATGGTGGGGATTACATATCTCGTGGAAGTGATGCTGGTGGCAGCTCGTATTCGTCCATGTATTCTAGCAGGGGTATGAACGGTAGTAGCAGTTATATGGGTAGTGGCGGCGGATCTAGGTCTTATTATTGA 2478 0.4447 MPPKVVKRGAAAKKATLSSKTAIQNQKQEPEPEPVKNHEVPVADVVAEDNPVETNNLAPEIVPNGLAAMESTDNGEEEVKDSIDECEKDEHLDLEDNYHESDPEEYVGDDYDERENEQDDGQEVGDEVEEELEEIVDEEDGDTGDEEVEYVYEEVEGDDDDDSAVGDDDDSAVGDDDDHAGTENEHEHLADVAEEGQGEVRKEQHKQKEFEVFVGGLDKNATEHHLRKIFGKVGKITEARLMMNPQNKRNKGFALLRFETVEQVKRALAELKNPVINGKQCGITPCQDNDTLYLDNICKTWKKEALKEKLKHYKVESFKDLTLVEDGSNEGTNCGFALLEFSSHSDAKEAYKRLQKTDVVFGVDKPAEVSFADSFDDLEDDITAQVKTVFIDLLPPSWGEDYVRGLLKKYGEVEKVELAKNRPAARRKNYGFVTFATHAAAVECAESITGSGLGDGNKKAKVRARLSRPFQKVRVKHVTHSDLSGRKFRRSARPSRSRPSLRSRPALRSRLGPPSRPTIQSRLGPPSRPALQSRLGPPSRSARVMRRLGNSIPPVRPSSARNRRPVSSVPVRARPATPPARSHERLTAAYPKSSSMKRDYGRPVDLPPPRSRVSADYGSQAASQRHSSYRDYPARDSGYSDLHRNASRTAPRRDHLDEIFDQRLERSPPPPHLSYREGRPHDYDTLSGSKRPYAAMDDISPQYADPDARQSRSRLDYDYGGSVSQYRESYGDRHGRSSLGYNSGSRSSSSIQNSHGAYSSRQDMSYGRGSIGASDGGIYSSSYGGDYISRGSDAGGSSYSSMYSSRGMNGSSSYMGSGGGSRSYY* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2309 825 MobiDBLite consensus disorder prediction 475 489 - -
Psa3g2309 825 Gene3D - 156 284 IPR012677 -
Psa3g2309 825 MobiDBLite consensus disorder prediction 1 185 - -
Psa3g2309 825 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 389 453 IPR000504 GO:0003723
Psa3g2309 825 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 358 IPR000504 GO:0003723
Psa3g2309 825 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Psa3g2309 825 MobiDBLite consensus disorder prediction 99 176 - -
Psa3g2309 825 SMART rrm1_1 211 284 IPR000504 GO:0003723
Psa3g2309 825 SMART rrm1_1 291 370 IPR000504 GO:0003723
Psa3g2309 825 SMART rrm1_1 388 463 IPR000504 GO:0003723
Psa3g2309 825 SUPERFAMILY RNA-binding domain, RBD 211 357 IPR035979 GO:0003676
Psa3g2309 825 MobiDBLite consensus disorder prediction 741 763 - -
Psa3g2309 825 MobiDBLite consensus disorder prediction 84 98 - -
Psa3g2309 825 MobiDBLite consensus disorder prediction 629 682 - -
Psa3g2309 825 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 288 IPR000504 GO:0003723
Psa3g2309 825 Gene3D - 289 373 IPR012677 -
Psa3g2309 825 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 374 IPR000504 GO:0003723
Psa3g2309 825 PANTHER RNA RECOGNITION MOTIF 1 825 - -
Psa3g2309 825 SUPERFAMILY RNA-binding domain, RBD 382 467 IPR035979 GO:0003676
Psa3g2309 825 CDD RRM_SF 212 283 - -
Psa3g2309 825 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 387 469 IPR000504 GO:0003723
Psa3g2309 825 MobiDBLite consensus disorder prediction 473 682 - -
Psa3g2309 825 Gene3D - 375 505 IPR012677 -
Psa3g2309 825 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 825 - -
Psa3g2309 825 CDD RRM_SF 389 463 - -
Psa3g2309 825 MobiDBLite consensus disorder prediction 694 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2309 Psa-Chr3 200516050 200523138 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2309 212 475 Eukaryotic Initiation Factors Gene Family AT1G22760 22.105 2.26e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2309 - - gmx:100779340 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2309 3 200516050 200523138 Psa3g2309 3 200516050 200523138 ECH