Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2290 ATGGCTTCCACCACCAAAGATTCAGATTTGGCCTATTTAGAAGACATTCAACAATACCTTCTTTGTGATGATTCCAGCTTTCTAACATCTTATCAACCTTTTACAAGCCCTAAGAGTGACAGTGATTCAGGCACATATGTAGGGACGGATAAGGTAAGCGCGCCTCCGGTGTCATGGAAGCGGTACAAGGGGGTGAGACGTAGGCCATGGGGGAAGTTCGCGGCAGAGATCAGAGATCCTAAAAGGAATGGTGCTAGGGTTTGGCTTGGAACTTATGTGACAGAGGAAGAAGCAGCTTTGGCTTACGACAAAGCTGCTTTCAAAATGCGTGGCCATAAAGCCAAGGTTAATTTTCCTCACCTCATTGGCAACGACGTGTCTACGTCGGAGCCAGAGAGGGAGGTGATTTTGAAACCGGATTCGCCCTCGCCCGAACCTTCTTCGTCAGAGGGAAGTTGTGAGTCATCTTCACCTGGGTCGAAGAGGAGAAGGGGTATGGCTGACCTACTTAACAAAATAGCAAAGAATAGAAGTCAAGTTATGGTGGTTGAGAATGACAAGTCCTTAGAAGCAAAGGATTTTGAGCAATGGGTGAATGAGTTGAATGATTGCACTCTAATCTGGAGCTCCTAG 633 0.4676 MASTTKDSDLAYLEDIQQYLLCDDSSFLTSYQPFTSPKSDSDSGTYVGTDKVSAPPVSWKRYKGVRRRPWGKFAAEIRDPKRNGARVWLGTYVTEEEAALAYDKAAFKMRGHKAKVNFPHLIGNDVSTSEPEREVILKPDSPSPEPSSSEGSCESSSPGSKRRRGMADLLNKIAKNRSQVMVVENDKSLEAKDFEQWVNELNDCTLIWSS* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2290 210 MobiDBLite consensus disorder prediction 142 159 - -
Psa3g2290 210 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Psa3g2290 210 PRINTS Ethylene responsive element binding protein signature 101 121 IPR001471 GO:0003700|GO:0006355
Psa3g2290 210 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 179 - -
Psa3g2290 210 MobiDBLite consensus disorder prediction 127 167 - -
Psa3g2290 210 Pfam AP2 domain 61 112 IPR001471 GO:0003700|GO:0006355
Psa3g2290 210 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
Psa3g2290 210 CDD AP2 60 121 IPR001471 GO:0003700|GO:0006355
Psa3g2290 210 PANTHER DNA-BINDING DOMAIN 1 179 IPR044808 GO:0003700|GO:0009873
Psa3g2290 210 SUPERFAMILY DNA-binding domain 61 120 IPR016177 GO:0003677
Psa3g2290 210 SMART rav1_2 61 125 IPR001471 GO:0003700|GO:0006355
Psa3g2290 210 Gene3D AP2/ERF domain 60 120 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2290 Psa-Chr3 199333173 199334297 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2290 25 150 AP2-EREBP Transcription Factor Family AT2G44840 54.762 1.13e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa3g2290 AP2 5.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2290 K09286 - gmx:102663872 240.35