Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2289 ATGGCTTCCACCATCAAAGAATCAGATTTTGAATATTTTGAACACATTCAACAATACCTTCTTTTTGATGATTCCAGCAGTCTTACATCTCATGAAACTTTCCCAAACCCTAAAAGTGACATTGATTTAGACACTGCTGTAGAGGTACGTGAAATCACGCCTCCGATATGGAAGCCATACAGAGGCGTGAGGCGTAGGCCATGGGGAAAGTTTGCAGCGGAGATAAGGGATCCAAAAAAGAATGGCGCTAGAGTTTGGCTTGGAACTTATCAGACTGAAGAGGAAGCAGCTTTAGTTTATGACAAAGCTGCTTTCAAAATGCGTAGCCGGAAAGCCAAGTTAAATTTTCCTCACCTCATTGGTAACGATGTCTCCACATCGGAACCAAAGAGGGAGGTTGTTTTGAAACGGGACTCGCCTGAACTTTCTTCATCTGAGGAAAGTTTTGGATCGTCGCCACTTGGATCGAACAGGAGGAAGGGTATGGCTGACCTACTTAACAAATTAGCTAAGAATAGAAGTCAAGCCATGGTGGTTGAGAATGAAAAGTCCTCAGAAGCAGATGATTTTGAGCAATGGGTGAATGAGTTGAATGATTGCACTACAATATGGAGCTCATAG 621 0.4283 MASTIKESDFEYFEHIQQYLLFDDSSSLTSHETFPNPKSDIDLDTAVEVREITPPIWKPYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYQTEEEAALVYDKAAFKMRSRKAKLNFPHLIGNDVSTSEPKREVVLKRDSPELSSSEESFGSSPLGSNRRKGMADLLNKLAKNRSQAMVVENEKSSEADDFEQWVNELNDCTTIWSS* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2289 206 MobiDBLite consensus disorder prediction 129 143 - -
Psa3g2289 206 PANTHER DNA-BINDING DOMAIN 1 175 IPR044808 GO:0003700|GO:0009873
Psa3g2289 206 CDD AP2 60 119 IPR001471 GO:0003700|GO:0006355
Psa3g2289 206 SUPERFAMILY DNA-binding domain 59 118 IPR016177 GO:0003677
Psa3g2289 206 ProSiteProfiles AP2/ERF domain profile. 59 117 IPR001471 GO:0003700|GO:0006355
Psa3g2289 206 Gene3D AP2/ERF domain 59 118 IPR036955 GO:0003700|GO:0006355
Psa3g2289 206 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 175 - -
Psa3g2289 206 MobiDBLite consensus disorder prediction 127 160 - -
Psa3g2289 206 SMART rav1_2 59 123 IPR001471 GO:0003700|GO:0006355
Psa3g2289 206 Pfam AP2 domain 60 109 IPR001471 GO:0003700|GO:0006355
Psa3g2289 206 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Psa3g2289 206 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2289 Psa-Chr3 199317591 199319610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2289 60 147 AP2-EREBP Transcription Factor Family AT2G44840 69.318 2.38e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa3g2289 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2289 K09286 - gmx:102663872 229.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2289 3 199317591 199319610 Psa3g2289 3 199317591 199319610 ECH
Psa4g5179 4 444203893 444205062 Psa3g2289 3 199317591 199319610 PCT