Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2288 ATGCAATTTTCTACCACCAAAGATTCAGAGTTTGCATATTTAGAACACATTCAACAATACCTTCTTCACGATAATGATTTCAACATCCTTGCATCACATCAAAATATTCAAAGCCCAAACAATAGTTCAAACACAACTGCATCTCCACGTGAAGTGCACGCGCCTCCCACGTGGAAGCGCTACCGTGGTGTGAGGCGGAGGCCGTGGGGGAAGTTTGCAGCTGAGATCAGAGATCCGAAGAAGAATGGAGCTAGGGTTTGGCTTGGAACTTATTTGACCGAGGAGGAAGCTGGTATGGCTTACGATAAAGCTGCTTTTAAGATGCGTGGCCACAAGGCCAAGCTCAATTTTCCTCATCTTATTGGCTCTGACGTGTATACGTCTGGGCCAAAAAGGGAGACGACTTTGAAACGGGAATCCTCGAAGCTCTCTTCATTATTAGAAGATAGCTCCGAGTCATCATCACAAGGGTCAAAGAGGAAGAGGAGCATGGCTAATCTACTTAACAAGTTAGCCAAGAATAGAAACCAAGCTATGGTGGTTGAAAGTGAAATGGTCTCACAAGAAAATGCTGTTAACCAATGGTTGAATGATTTCTCTCTACTATGGTGCTCTTAA 618 0.4401 MQFSTTKDSEFAYLEHIQQYLLHDNDFNILASHQNIQSPNNSSNTTASPREVHAPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAGMAYDKAAFKMRGHKAKLNFPHLIGSDVYTSGPKRETTLKRESSKLSSLLEDSSESSSQGSKRKRSMANLLNKLAKNRNQAMVVESEMVSQENAVNQWLNDFSLLWCS* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2288 205 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Psa3g2288 205 PRINTS Ethylene responsive element binding protein signature 100 120 IPR001471 GO:0003700|GO:0006355
Psa3g2288 205 ProSiteProfiles AP2/ERF domain profile. 60 118 IPR001471 GO:0003700|GO:0006355
Psa3g2288 205 SMART rav1_2 60 124 IPR001471 GO:0003700|GO:0006355
Psa3g2288 205 CDD AP2 59 120 IPR001471 GO:0003700|GO:0006355
Psa3g2288 205 Pfam AP2 domain 60 111 IPR001471 GO:0003700|GO:0006355
Psa3g2288 205 SUPERFAMILY DNA-binding domain 60 119 IPR016177 GO:0003677
Psa3g2288 205 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 4 177 - -
Psa3g2288 205 MobiDBLite consensus disorder prediction 131 162 - -
Psa3g2288 205 Gene3D AP2/ERF domain 59 119 IPR036955 GO:0003700|GO:0006355
Psa3g2288 205 MobiDBLite consensus disorder prediction 131 145 - -
Psa3g2288 205 Coils Coil 164 184 - -
Psa3g2288 205 MobiDBLite consensus disorder prediction 146 162 - -
Psa3g2288 205 PANTHER DNA-BINDING DOMAIN 4 177 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2288 Psa-Chr3 199281312 199282303 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2288 46 145 AP2-EREBP Transcription Factor Family AT2G44840 57.391 3.23e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa3g2288 AP2 4.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2288 K09286 - gmx:102663872 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2288 3 199281312 199282303 Psa3g2288 3 199281312 199282303 ECH