Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2286 ATGGCTTCTACTACCAAAGATTCAGATTTTGCATATTTGGAACATGTTCAACAATACCTTCTTTTTGATGATTCCAGCTTTCTAACATCTTATCAACCTTTTTCAAGCCCTAAAAGTGACAGTGATTCAGACAAATCTGCAGGAGCTGGTGAGGTAACCGCACCTCCAGCGTCTTGGAAGCGATACAAGGGCGTGAGGCGAAGGCCGTGGGGGAAGTTTGCAGCCGAGATCAGAGATCCTAAAAAGAATGGCGCTAGGGTTTGGTTAGGAACTTATTTGACCGAGGAGGAAGCAGCTTTGGCTTACGACAAAGCTGCTTTCAAGATGCGTGGCCAAAAGGCCAAAGTTAATTTTCCCCACCTCATTGGCAACGACGTGTTTACGTCGGAGCCAGAGAGGGTGGTGATTTTGAAACAGGATTCGCCAGAACCTTCTTCGTCAGAGGGAAGTTGTGAGTCATCTTCACCTGGGTCGAAGAGGAGAAGGGGTATGGCTGATCTACTTAACAAAATAGCAAAGAATAGAAGTCAAGTTATGGTGGTTGAGAATGACAAGTCCTTAGAAGCAAATGATTTTGAGCAATGGGTGAATGAGTTGAATGATTGCACTATAATCTGGAGCTCCTAG 627 0.4498 MASTTKDSDFAYLEHVQQYLLFDDSSFLTSYQPFSSPKSDSDSDKSAGAGEVTAPPASWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAALAYDKAAFKMRGQKAKVNFPHLIGNDVFTSEPERVVILKQDSPEPSSSEGSCESSSPGSKRRRGMADLLNKIAKNRSQVMVVENDKSLEANDFEQWVNELNDCTIIWSS* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2286 208 MobiDBLite consensus disorder prediction 140 157 - -
Psa3g2286 208 Pfam AP2 domain 61 111 IPR001471 GO:0003700|GO:0006355
Psa3g2286 208 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 177 - -
Psa3g2286 208 SUPERFAMILY DNA-binding domain 61 120 IPR016177 GO:0003677
Psa3g2286 208 MobiDBLite consensus disorder prediction 139 162 - -
Psa3g2286 208 Gene3D AP2/ERF domain 60 120 IPR036955 GO:0003700|GO:0006355
Psa3g2286 208 SMART rav1_2 61 125 IPR001471 GO:0003700|GO:0006355
Psa3g2286 208 PANTHER DNA-BINDING DOMAIN 1 177 IPR044808 GO:0003700|GO:0009873
Psa3g2286 208 CDD AP2 60 121 IPR001471 GO:0003700|GO:0006355
Psa3g2286 208 MobiDBLite consensus disorder prediction 36 55 - -
Psa3g2286 208 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
Psa3g2286 208 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Psa3g2286 208 PRINTS Ethylene responsive element binding protein signature 101 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2286 Psa-Chr3 199129236 199130357 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2286 25 148 AP2-EREBP Transcription Factor Family AT2G44840 55.645 1.44e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa3g2286 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2286 K09286 - gmx:102663872 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2286 3 199129236 199130357 Psa3g2286 3 199129236 199130357 ECH