Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2278 ATGAGTGATTCTTCGGTGAAGAATTTGGCTATTACAGATAAGGTTCAAAAACCTGGTGGTTGTGTTGGAATTTTCTTTCAGCTTATTGATTGGAAGAAGAAACTTGTCAAGAAAAAGCTCTTCTCCAAGAAGCTTCTTACTCCTGCTCGGGCGAAAAAGTTTAGAGGAGATGAAAAAATGCCAAATTCCAAACTTCACTTGATTGCAAATGAGAATAGTGGAGGTTTCCCAAAAGGTGGGAGTCATGGTGTAGATGTGGATCAAAAGAGTGAAATGAGGGTTCCGAGTTTGGTAGCTAGGTTAATGGGTCTAGATTCTATTCCGGCTGCTCAGCGAGATAAATCGAAGAAAGCTTTGTGTCCTGATTATAGTTGCGGCGATGAGAAAGAGTGTTTGAGTCATCATTGTGAGTTGGATAGGCAAGGTAAGGATTTGGAAATGAGAGTTGTGAAGCATGATTCGAGACCTCAGAAGCTTCAGAAAACTGGAGTGTGTGAGAGAAATGCAGTGACTAGGTTTGGAGCGGAGGCTCTTCATATTAAGAGTGTTTTGTCGCGAGCGAAAAAGTATAACCAACATCATAATCATCATCACCCGAAGCTTGCTTCTCCTTTGAAAAGTCCTAGGGTTAATTCCGGAAAAGGTGCTTCTCGAGGCTCAAGATTAATGGGAGCGGCTGCTAAGATTTTGGAACCTGGACTGCACGCGAGTAGAGCTAAAGGCTCTATTATGTATCATGCGTCCACATGTCCTCTTAAGACCGGCATTGGAACGGATGGTGTGGGAAATAAGTCACCGGTTATGCAAAATCAATCTTGTTATGGCTCCAGCACGGCCAAACCTTTAACAGGGCAGTCTTCTTGCAAAAATTGTGGCAATTTGCTTGATGTAATTGATTGCACTGTGGAAGTTAGGGGATCACCAGATGTTCCTCCGCCGACTGTTTCTGACGTGGAAATCAACGCTACCTCTATGGTGTCGTCGGTTAAGAAGGCAAAGTCTTTCACTCCCTCTCAAGGACAAGGAAGAGATATCGTTCTTCCGAGAAGTCAGGGAAAGTTCTCATCTTCTGTTTCTGATGAAGAGGGGAAGAATTATGCACAGCGCTCATGGAGTGAACCGACTACCATAAGAATTCCAATGCCCCGCGAAGGTCCGGCTAAATGTAGTTCATCATGCCAACCAGTAAGGGCTCAAGAGGATGATGCATCTTCTTTTGCCTATAAACATAAAACACAAGAATCAAAATTAAGTAGCGAGGGCTCTTCAACTGGATCCACATCGAGTAGTACGCAAGTAAAAAGAGTATCATCGTATGCGAGCACTACAAGTGGGACTAAAGACTTTGTTGCTTTGAATAGAAGTGTAAGTGGTCGAACGAGGATGAGGTCGCCTACTAAAGTTGATAGTTCCAAATTTGACTTAGAGAAAAAACCTTGTTATAGACAACAACACGAGTCCTCGTCTCATGTAAGGACATTGGAGAGGAAAAGAAGGACCCTGAATGTCACACAACTCGAAGGCACGACTCCTGCTAGTTCAGCTGGTTTGAAACAAAGAAATCTTCGCCGTGATGCAATTGGTGGAAAAAGGAGGGACTTTGACTCGTCCTCGTCGAACAGTCCCAATGTAAAAAATAAAGGACGCGGTAAAGAGGAACCGGTTAAGGTGAGCCACAATAGGAACAATGATGCAGTTTCATTCACGTTTAGTTCCCATTTGAAGCAAAAGACGGGAATGCCCGTAGAGGTGGAAGCGACAAACATTAATGATGACAGGAATAAATACTTCCAAAGACCTCCACCGTTGAAAGTTGACGATTTAAGTGGTTTTCTAGAACAAAAGTTGAAGGAACTAACCTCTCGAAAAAACGAGTTGGCTACAAATGGTCTAACTCAAAAATCAAGTGCTGCGATTCTTCAAGAGCTGATATCTGCTCTAAGTTCAGAACATTTGAACCATCATGACGGTCATATGCATAATGAAGATGTTAGTTTCCCTTGTGGAACCAAACAAGAAAGATTGTTAGGAACCTCTTGCAATGATAATCATCTCAGTCCTGGATCTGTTTTAGAAGCTTCATTTTCTTCTAGTAGTCTCGACGAAAGCTCAGGACGTGGTTTTCACCCCGATTCCGTGAATTTCTCGTATAGCCAGACGGAACAAATGGAACACGATGATGAACTTTTGGATTCTGCAGCGTCTTTTAATAAAGGAAGTATAAGCAAGATACTAGTTGATATTGTCAACCAAATTCCTACGGTATTGCAATGTTTATATTCGTTCGGGACACAATTCACAAGAAGCAAGCTCAATAATATGAAGAGAGTTCTCTTGAATTCTGAATTGGTGCTTCGGATTGCAAATGAGCATAGCGAGGAAGAAGTGCCGGCACAGCTTCTAATTTATCGGTTTCTTCGTAACGAATTGGACGCGATGTTGACTGATTTTAATGGTTTTGTTGGCTGTGAGGATTTGAAACCAAGGAAGATGCTCAATGGATTTATCTTGGATTGTGTTATGGAATATCTAGAATCAAATTGTTGCCAATATTTTCACTCGGGATTCAATGCATGGACGAAGCTGCCGTTATGCATTAAAGCCGAGACGTTGGCTCAAGAGGTCACGAGAGAGGCGAATAAGTGTACGCGTATGGTTGGGATGGTACCCGATGAAATAATCGAATGGGAGATGAGTCATTCTCTCGGGAAATGGAATGACTTTGATATTGAAGCATTTGAGGCCGGTGTTGATTTAGACGGAGACATACTTCATAATTTGGTTGGCGAAGTTGTTGAAGAGTATGTAGGTTGCAAGCATAGTTATTACTCCTTTTGA 2838 0.4225 MSDSSVKNLAITDKVQKPGGCVGIFFQLIDWKKKLVKKKLFSKKLLTPARAKKFRGDEKMPNSKLHLIANENSGGFPKGGSHGVDVDQKSEMRVPSLVARLMGLDSIPAAQRDKSKKALCPDYSCGDEKECLSHHCELDRQGKDLEMRVVKHDSRPQKLQKTGVCERNAVTRFGAEALHIKSVLSRAKKYNQHHNHHHPKLASPLKSPRVNSGKGASRGSRLMGAAAKILEPGLHASRAKGSIMYHASTCPLKTGIGTDGVGNKSPVMQNQSCYGSSTAKPLTGQSSCKNCGNLLDVIDCTVEVRGSPDVPPPTVSDVEINATSMVSSVKKAKSFTPSQGQGRDIVLPRSQGKFSSSVSDEEGKNYAQRSWSEPTTIRIPMPREGPAKCSSSCQPVRAQEDDASSFAYKHKTQESKLSSEGSSTGSTSSSTQVKRVSSYASTTSGTKDFVALNRSVSGRTRMRSPTKVDSSKFDLEKKPCYRQQHESSSHVRTLERKRRTLNVTQLEGTTPASSAGLKQRNLRRDAIGGKRRDFDSSSSNSPNVKNKGRGKEEPVKVSHNRNNDAVSFTFSSHLKQKTGMPVEVEATNINDDRNKYFQRPPPLKVDDLSGFLEQKLKELTSRKNELATNGLTQKSSAAILQELISALSSEHLNHHDGHMHNEDVSFPCGTKQERLLGTSCNDNHLSPGSVLEASFSSSSLDESSGRGFHPDSVNFSYSQTEQMEHDDELLDSAASFNKGSISKILVDIVNQIPTVLQCLYSFGTQFTRSKLNNMKRVLLNSELVLRIANEHSEEEVPAQLLIYRFLRNELDAMLTDFNGFVGCEDLKPRKMLNGFILDCVMEYLESNCCQYFHSGFNAWTKLPLCIKAETLAQEVTREANKCTRMVGMVPDEIIEWEMSHSLGKWNDFDIEAFEAGVDLDGDILHNLVGEVVEEYVGCKHSYYSF* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2278 945 MobiDBLite consensus disorder prediction 456 563 - -
Psa3g2278 945 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 9 936 - -
Psa3g2278 945 MobiDBLite consensus disorder prediction 503 517 - -
Psa3g2278 945 MobiDBLite consensus disorder prediction 190 220 - -
Psa3g2278 945 Pfam Domain of unknown function (DUF4378) 775 930 IPR025486 -
Psa3g2278 945 Coils Coil 609 629 - -
Psa3g2278 945 MobiDBLite consensus disorder prediction 332 375 - -
Psa3g2278 945 Pfam DUF761-associated sequence motif 87 113 IPR032795 -
Psa3g2278 945 MobiDBLite consensus disorder prediction 417 443 - -
Psa3g2278 945 MobiDBLite consensus disorder prediction 465 502 - -
Psa3g2278 945 MobiDBLite consensus disorder prediction 332 443 - -
Psa3g2278 945 PANTHER DNAA INITIATOR-ASSOCIATING PROTEIN 9 936 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2278 Psa-Chr3 197946574 197951307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2278 10 932 TRM (TON1 Recruiting Motif) Superfamily AT1G67040 30.591 5.31e-77 267