Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2260 ATGAATCAACTCATTTTTATCTTTATATCACCAAAACCAATCCTATTATTCACATTTCATACACTATTACTTGTTTGTTCTTACGCAAGAATGAAACCTCTGTTTCATTCATCTTCTTTTTGCTTTTTCTCTTTGTCACTTTTGATGATCTTGATCATAAATATTCCAACATGTCTGTGTGAGGATGATGGATATTACAAAAACTGTAACACGGCTTTTATCTGCGGAGACAACAAACAAGACCTCAGGTATCCGTTTTGGGGAGGAACCAGAGAAAGTTATTGTGGTGGTGTTGCTGATGATATTAATACGATGCTTACATGCGAAGAAAAAGTTTCAAAGATCACAATCAATAACCTTAAATACCGTATTCTTGATTGGGACAATACAACACAGAAACTCACTGTTGCTAGGGACGATTACTGGAGTGGTAATGTTTGTGATGTGAATACTAATATCGAGAACAGCACATTTGATAACACTCAATTTCAACGTTACAGTGATGATGTTGCTAACGTAACTCTCTTATATGGTTGCAATGTTGGAGCTGTAAGTTTACTGACTCCGTTTTATGATATTGGCTGTGGCGGAAGTGAATATGTTATCTACACCATTGTTTATTCTGCTTCATTGTCTTCCTTCTGCACTCCGACTCGTAAGGTCGTAATTCCGATTTTTGGAACTCAAGCTGCACAACTGGGATCTGGCAACGGAACACTGAGCGAGGCATTAAAAGATGGTTTTGAGTTGAAATGGATTGGAAATTACACGGAGTGCCAGAGTTGTGTTACTTATGGTGGAGCGTGTGGGAATGATGGAGGTAATCAATTCAGATGTTTCTGCAATGATGGAACTCATGCAACTTCATGCCATTCACCATCGGTCCCATCCACGACCACAAGTTCAAAACTTAACTGGAGGCCTATTGTGATAGGTGCTGCAGGATTTGTAGTAATAGTATTCTTTATAATTATTATGATTAGATGTCACCTTAAAAGGGGTATTGGTAGACAACAAAAGAGTATTTTCGAGAACAAAAGAGAGCTTGTTGAGCACAATGTGGACGTTTATATGCAAAATTATAATTTATCCATGCCAAGAAGATATAGTTATACAGAAGTAAAATGGATCACAAGCTCATTTCGGGAGAAATTAGGCCAAGGAGGATATGGTGTTGTGTACAAAGCAAGTTTAAACGATGGTCGTCAAGTGGCGGTGAAACTTATAAACGAATCAAAGGGAAATGGAGAAGAATTCGTAAACGAAGTTGCTAGCATTAGTAGAACATCACACATGAACATTGTGTCACTTTTAGGTTTTTGTTATGAAGGGAACAAAAGAGCACTAATATATGAGTTCATGCCCAAAGGTTCATTGGATAGGTTCATCTATAAAAGTGAATTTCCTAATGCTATTTGTGACTTTGATTGGAACACTCTATTCCAAATTGCAATAGGCATTGCTAGAGGACTAGATTACTTGCATCAAGGATGCAATTCAAGGATTTTACATCTTGATATCAAACCCCAAAACGTTCTTTTGGATGAAGATTTTTGTCCAAAAATATCTGATTTTGGTTTGGCTAAAATATGCCAAAGGAAGGATAGTATCGTGTCAAAACTAGGGGTAAGAGGAACTATAGGATATATGGCACCTGAAATATTCAGTAGAGCATTTGGTGGAGTTTCTTACAAGTCTGATGTGTACAGTTATGGCATGCTGATTCTTGAGATGATCGGAGGAAGAAAGAACTATGACACCAGAGGGTCATGTACTTCTGAAATGTACTTTCCTGATTGGATTTATAAAGATCTTGAGCAAGGTAATACCAGCAATACTCTTTTAAATAGTTTGACAATATCAGAGGAAGAAAATGATATGGTTAGAAAGATTACTTTGGTGAGTCTATGGTGCATTCAAACGAATCCATCAGACAGACCACCCATGAATAAAGTAATAGAAATGCTACAAGGACCACTTTCATCAGTGCCATATCCTCCAAAGCCGGTCTTGTTTTCTCCAGAAAGGCCAGCACTACCCGTAGAATGTATATCCTCATCCGATTTCAATGAAACAAGTTCGATTACGGTTTCAAATTAA 2100 0.3738 MNQLIFIFISPKPILLFTFHTLLLVCSYARMKPLFHSSSFCFFSLSLLMILIINIPTCLCEDDGYYKNCNTAFICGDNKQDLRYPFWGGTRESYCGGVADDINTMLTCEEKVSKITINNLKYRILDWDNTTQKLTVARDDYWSGNVCDVNTNIENSTFDNTQFQRYSDDVANVTLLYGCNVGAVSLLTPFYDIGCGGSEYVIYTIVYSASLSSFCTPTRKVVIPIFGTQAAQLGSGNGTLSEALKDGFELKWIGNYTECQSCVTYGGACGNDGGNQFRCFCNDGTHATSCHSPSVPSTTTSSKLNWRPIVIGAAGFVVIVFFIIIMIRCHLKRGIGRQQKSIFENKRELVEHNVDVYMQNYNLSMPRRYSYTEVKWITSSFREKLGQGGYGVVYKASLNDGRQVAVKLINESKGNGEEFVNEVASISRTSHMNIVSLLGFCYEGNKRALIYEFMPKGSLDRFIYKSEFPNAICDFDWNTLFQIAIGIARGLDYLHQGCNSRILHLDIKPQNVLLDEDFCPKISDFGLAKICQRKDSIVSKLGVRGTIGYMAPEIFSRAFGGVSYKSDVYSYGMLILEMIGGRKNYDTRGSCTSEMYFPDWIYKDLEQGNTSNTLLNSLTISEEENDMVRKITLVSLWCIQTNPSDRPPMNKVIEMLQGPLSSVPYPPKPVLFSPERPALPVECISSSDFNETSSITVSN* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2260 699 SMART serkin_6 379 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2260 699 ProSiteProfiles Protein kinase domain profile. 379 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2260 699 Gene3D Phosphorylase Kinase; domain 1 352 453 - -
Psa3g2260 699 Pfam Wall-associated receptor kinase C-terminal 218 284 IPR032872 -
Psa3g2260 699 PANTHER TYROSINE KINASE FAMILY PROTEIN 50 696 - -
Psa3g2260 699 ProSitePatterns Protein kinases ATP-binding region signature. 385 407 IPR017441 GO:0005524
Psa3g2260 699 Pfam Protein kinase domain 382 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2260 699 PANTHER RUST RESISTANCE KINASE LR10-RELATED 50 696 IPR045874 GO:0004672
Psa3g2260 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 502 514 IPR008271 GO:0004672|GO:0006468
Psa3g2260 699 SUPERFAMILY Protein kinase-like (PK-like) 355 656 IPR011009 -
Psa3g2260 699 Gene3D Transferase(Phosphotransferase) domain 1 454 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2260 Psa-Chr3 197135672 197138543 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2260 44 695 Receptor kinase-like Gene Family AT5G38260 40.774 1.66e-147 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Psa3g2260 Pkinase 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2260 - - cam:101489912 893.649