Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2259 ATGAAGCCTCTGCTTCATCATTTTTCTTCCATTATTGTTTTCTTTTTCTCCTTCATACTTTTGATGATCTTCATCATCAATATTCCAACGTGTCTATCCGAGGATGATGAGTACACGAAATGTAACACGGCTTTTATTTGTGAAGACAGTATGGAAGACCTCAGGTTTCCGTTCTGGGGTGGAAACAGAGAAACTTATTGTGGTAATGTTGCTGATTGTATTAATACGAAGCTTACATGCGAAGGTAAAGTTTCAAAGATCACAATTAATAGTGTTAAGTATCGTATTCTTGAGTGGGACAATACAACACAGAAACTCACAGTTGCTAGAGATGATTACTGGAGTGGTAATGTTTGTGCTGTGAATACTAATATTGAGAGCAGCACATTTAATAACACTAAATTTCAACTTTACAGTAATGATGTTGCCAACGTTACTCTCTTATACGGTTGCAATGTTGGAAGTGGAAAATTACTGAATCAGTTTTATGATATTGATTGCGGCGAAAGTAAATATGTTGTATACACGGTTGTTTATTCTGCTTCGTTCTCTGGCTTCTGTACTCCAACTCATGCTGTAGTGATTCCGATTTTGAGAGCCCGAGCTGCACAACTGGGATCTGGCAACGGAATACTGAGCGAGGCATTAAAAGATGGTTTTGAGTTGAAATGGATCGGAAATTACACTGAGTGCCAGAGTTGTGTTGCTTCTGGTGGAGCATGTGGGAATGATGGAGATACTGAATTCAGATGTTTCTGCAATAATGGAACTTACACAACCTCATGCACTTCAGAAAAGGCATCATCCTCAAGTTTTGGAGTGGAGTGGAATGCAAATAATAGTTTGTGTCAAGATTGTCAAAGCTCTGGTGGACACTGTGGATATGATCCAATCTCAAATGTTTTTACTTGCTATTGCAAGGATGGATCCTTCCCACATTCATGTGGATCAGGTTCAAAACATAACTGGAGGCTTGTTGCTATAGGTGCAGGATTTGGAGTAACAATATTCTTTATTATTACTATTATTATGACTAAAAGGGGTACATGTAGACAAGAAAAGAGTATTTTTAGGAAAAGAAGAAAGCTTGTGGACAACAATGTGGAAATTTTCATGCAAAATTATAATTTACACATGCCAAGAAGATATAGTTATGCAGAAGTAAAAAGAGTTACAAACTCATTCCGAGATAAATTAGGCCAAGGAGGATATGGTGTTGTGTACAAAGCAAGTTTAAACGATGGTAGTCAAGTGGCGGTGAAACTTATAAACGAATCAAAGGGAAATGGAGAAGAATTCATAAACGAAGTTGCTAGCATTAGTAGAACATCACACATGAACATTGTGTCACTTTTAGGTTTTTGTTATGAAGGGAACAAAAGAGCACTAATATATGAGTTCATGCCCAAAGGATCATTGGATAAGTTCATCTATAAAAGTGAACTTCCTAATGCTATTTGTGATTTTGATTGGAACACTCTGTTCCAAATTGCAATAGGCATTGCTAGAGGACTGGAGTACTTGCATCAAGGATGCAACTCAAGGATTTTGCATCTTGATATCAAACCCCAAAACATTCTTTTGGATGAAAATTTTTGTCCAAAAATATCTGATTTTGGTTTGGCTAAAATATGTCAAAAGAAGGATAGTACCGTGTCAATGCTAGGGGCAAGAGGAACTATAGGGTATATGGCACCTGAAATATTTAGTAGGGCATTCGGTGGAGTTTCTTACAAGTCTGATGTGTACAGTTATGGCATATTGATTCTTGAGATGATAGGAGGAAGAAAGAACTATGACACCGGAGGGTCACATAGTTCTGAAATGTATTTTCCTGATTGGATTTATAAAGATCTTGAGCAAGGTAATACTAGTAAAACTCTTTTAGATAGTTTGACAATCTCAGAGGAAGAAAATGATATGGTTAGAAAGATTACTTTGGTGAGTCTATGGTGCATTCAAACGAATCCATCAGACAGACCACCCATGAATAAAGTAATAGAAATGCTACAAGGACCACTTTCATCGGTGTCATATCCTCCAAAGCCGGTCTTGTTTTCTCCCGAAATGCCACCACTACAAGTAGACTGTATATCCTCCTCCAATTCCTACGAGACAAATTCAATTACAGTTTCAAAATACGAATCAAATGATTAG 2157 0.3718 MKPLLHHFSSIIVFFFSFILLMIFIINIPTCLSEDDEYTKCNTAFICEDSMEDLRFPFWGGNRETYCGNVADCINTKLTCEGKVSKITINSVKYRILEWDNTTQKLTVARDDYWSGNVCAVNTNIESSTFNNTKFQLYSNDVANVTLLYGCNVGSGKLLNQFYDIDCGESKYVVYTVVYSASFSGFCTPTHAVVIPILRARAAQLGSGNGILSEALKDGFELKWIGNYTECQSCVASGGACGNDGDTEFRCFCNNGTYTTSCTSEKASSSSFGVEWNANNSLCQDCQSSGGHCGYDPISNVFTCYCKDGSFPHSCGSGSKHNWRLVAIGAGFGVTIFFIITIIMTKRGTCRQEKSIFRKRRKLVDNNVEIFMQNYNLHMPRRYSYAEVKRVTNSFRDKLGQGGYGVVYKASLNDGSQVAVKLINESKGNGEEFINEVASISRTSHMNIVSLLGFCYEGNKRALIYEFMPKGSLDKFIYKSELPNAICDFDWNTLFQIAIGIARGLEYLHQGCNSRILHLDIKPQNILLDENFCPKISDFGLAKICQKKDSTVSMLGARGTIGYMAPEIFSRAFGGVSYKSDVYSYGILILEMIGGRKNYDTGGSHSSEMYFPDWIYKDLEQGNTSKTLLDSLTISEEENDMVRKITLVSLWCIQTNPSDRPPMNKVIEMLQGPLSSVSYPPKPVLFSPEMPPLQVDCISSSNSYETNSITVSKYESND* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2259 718 Gene3D Transferase(Phosphotransferase) domain 1 468 678 - -
Psa3g2259 718 SUPERFAMILY Protein kinase-like (PK-like) 368 670 IPR011009 -
Psa3g2259 718 ProSiteProfiles Protein kinase domain profile. 393 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2259 718 ProSitePatterns Protein kinases ATP-binding region signature. 399 421 IPR017441 GO:0005524
Psa3g2259 718 SMART serkin_6 393 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2259 718 Pfam Protein tyrosine and serine/threonine kinase 395 670 IPR001245 GO:0004672|GO:0006468
Psa3g2259 718 PANTHER TYROSINE KINASE FAMILY PROTEIN 23 270 - -
Psa3g2259 718 PANTHER TYROSINE KINASE FAMILY PROTEIN 279 710 - -
Psa3g2259 718 Gene3D Phosphorylase Kinase; domain 1 366 467 - -
Psa3g2259 718 Pfam Wall-associated receptor kinase C-terminal 183 255 IPR032872 -
Psa3g2259 718 Pfam Wall-associated receptor kinase C-terminal 268 309 IPR032872 -
Psa3g2259 718 ProSitePatterns Serine/Threonine protein kinases active-site signature. 516 528 IPR008271 GO:0004672|GO:0006468
Psa3g2259 718 PANTHER RUST RESISTANCE KINASE LR10-RELATED 279 710 IPR045874 GO:0004672
Psa3g2259 718 PANTHER RUST RESISTANCE KINASE LR10-RELATED 23 270 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2259 Psa-Chr3 197034531 197039011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2259 19 706 Receptor kinase-like Gene Family AT5G38260 38.604 1.70e-149 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Psa3g2259 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2259 - - cam:101489912 889.797