Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2244 ATGGCCTCCAAATCCCAAACCCTAGAGTTAAACTCCACCCAGTTATTCACCACCGCTCTTCAATCCCTCAATCTCCCTAAACCCTCCCTCCCACTCCCTCCACTCCCATCATCTTCCTCCATTCCCCACTCCAAACTCATCCCCAACACCCGCTTCCTCATCGACGCATTCCGTCACTCAGGCGACTTCTCCGTCTCCTACTTCCTCTCTCACTTCCACTCCGATCACTACACCGGTCTCACATCCTCCTGGTCTCGCGGTATCATCTTCTGTTCCCCCACCACCGCTACCCTCCTCATCCGCATCCTCAACATCCCTTCCCCTTTCATCTACCCTCTCCCTCTTCACCAACCTGTTCTAATCGATGGCTCTTCTATCACCCTCATCGACGCCAATCACTGTCCCGGTGCCGTTCAGTTCCTCTTCCAGGTTCCCTTGTCCGAACAACAATCCATGAGGTACGTTCATACTGGTGATTTTCGGTTTACTCCTGAAATGATATTGGAGCCTGCACTTGCCTCATTTATTGGTGCTGATGCTGTGTTTTTGGATACAACTTATTGTCACCCTAAGTTTGTTTTCCCTTCGCAAGACGAGTCTATTAATTATATTGTTGATGCTGTAAACCAGTGTGATGGTGATGATGTATTGTTTCTTGTTGCTACTTATGTTGTTGGTAAGGAGAAGATTTTGCTTGAGCTTGCTAGGAAGTTTGGAAAGAAGGTACATGTGGATGCTAGGAAAATGGAGGTTTTGAAGGCTCTTGGGTATGGAGAGAGTGGTGAGTTCACCGAGGATGTTTTAGAGACTAATATTCATGTTGTTGGGTGGAATATGTTGGGGGAGACTTGGCCTTATTTTAGGCCTAATTTTGTTAGGATGAAGGAGGTCATGATTGAGAGAGGGTACTCCAAGGTTGTTGGTTTTGTGCCTACTGGATGGACTTATGAAGTGAAGCGTGATAAGTTTGCGGTTAGGTCCAAGGATTCTTGTCAGATTCATCTTGTGCCGTATAGCGAGCATTCAAACTACGATGAGCTTAGGGAATATGTGAGGTTTTTGAAACCAAAGAGGGTTGTTCCGACTGTGGGTTTAGATGTTGAGAAGAGTGATAGTAAACATGTTGACAAAATGAGGAAGTATTTTGCTGGTTTGGTTGATGAGAAGGCCAACAAGCAAGAGTTTTTAAGGGGGTTTAAGCGGTGTGACTCTGGTGTAGTGGGTATCGAGGCTGGGAAGGATGCAACTGATGATTTGGAACCGGGGCAGAGCATCGAGAAAAAAGTGAAGCCATCTGATGTGGGAGAGGATAATAGTAATCCGGATGTTATTGTGAGTCTGTCATCTTGTTTGGGAGATACTTGCATAGAAGATCCTACATTGCTAAATGAAGAAGAAAAAGAGAGGGTCATTCAAGAACTGAGTTGTTGTTTGCCAGCATGGGTCACCCGAAGCCAAATGTTAGATTTGATCAGCATCTGTGGGAGCAATATCGTTGAAGCAGTTTCTAATTTCTTTGAACGTGAAACTGAATTTCATGAGCAAGTAAATTCTGGTCAAACTTCAGTTCCAACACCCAGGTGTTGCCCATCGAATGACTCCAGTCCTATTTCAAAATCAAGCCTCAACAATACAAACAGCCCTTTAAGAAATTTGGACATTTTTCCAAGTCAAGTCTCTAAATTGACCAACTCCAAATTGACTAAACTAAGGCACACACTACCAAATCAGATTTCCCCTTCCAAAAGAAAGAGGAGTAGTGAAAGTAAGCCAAACAAGAAAGTAAAAGTCAAAGCAAAATCAGAATCGAGTGGTTCAAAGCAGGCAACAATAACAAAATTCTTCAGCAAAGCAATGCCTGAGATTCCTGGTGATACCCAATCTGATCAATGTGAAACAAATCCGGGGGAAAGCCCCAAAGTTGAAGAATTGTTGCCAACTGCTGCTGGAAACTTGTATAAGCATGAGATTGATCAGTTTATACAAATAATAAATGGGGACGAGTCACTAAAAAAGCAAGCAATTACTATAATTGAAAAGGCAAAAGGAGATATCAATAAGGCATTGGATATATATTACTGTAATTCTTGCAATCTTGGTGAAAGTGAAATATCAGTTCAAGGGGAGTGTGATATCGACAGACCAATAGAGAAGAAGAATGTGTCACAAGAGTTGAGAGTTATACCTGATATTTCTATGCATAGAGTGTTAAAAGATAATGTAGATGTAACTCACGTATCTTTACCATCTGAGAAATACAACCCCAAAGAACATGCGTGTTGGATTGATGGACAGCCTGCACCATATTTACATCTTGCACGAACCTTCAACCTGCTTGAGGATGAAAAAGGAAAGATAAAAGCTACTTCAATGCTATGCAACATGTTCAGAAGTTTGTTGGCCTTGTCTCCAGAAGATGTGCTTCCTGCTGTGTATCTATGTACAAACAAAATTGCCGCAGACCATGAAAATGTGGAACTAAATATTGGTGGAAGTTTAGTCACTACAGCACTTGAAGAGGCATGCGGGACAAATCGATTGAAAATTAGGGAGATGTATAACAAACTTGGCGACCTTGGTGATGTTGCTCAAGAGTGTCGTCAAACACAGAGATTGCTCGCACCACCTACGCCACTTCTGATTAAGGATATTTACTCTGCACTACGAAAGATAAGTGTGCAAACAGGCAATGGAAGCACATCACGAAAGAAAGGCATCATTGTTCATCTCATGCGTTCCTGCCGTGAAAAGGAGATGAAGTTTCTTGTCCGGACCTTGGTAATTATTCCCCGTTCTTGGGTGCATAGGAGTTTAGAGGGAGGGGAGGTTATTCCATTTCAAGTTGGATCTGTGAGCTACAAAAGTTGA 2868 0.4282 MASKSQTLELNSTQLFTTALQSLNLPKPSLPLPPLPSSSSIPHSKLIPNTRFLIDAFRHSGDFSVSYFLSHFHSDHYTGLTSSWSRGIIFCSPTTATLLIRILNIPSPFIYPLPLHQPVLIDGSSITLIDANHCPGAVQFLFQVPLSEQQSMRYVHTGDFRFTPEMILEPALASFIGADAVFLDTTYCHPKFVFPSQDESINYIVDAVNQCDGDDVLFLVATYVVGKEKILLELARKFGKKVHVDARKMEVLKALGYGESGEFTEDVLETNIHVVGWNMLGETWPYFRPNFVRMKEVMIERGYSKVVGFVPTGWTYEVKRDKFAVRSKDSCQIHLVPYSEHSNYDELREYVRFLKPKRVVPTVGLDVEKSDSKHVDKMRKYFAGLVDEKANKQEFLRGFKRCDSGVVGIEAGKDATDDLEPGQSIEKKVKPSDVGEDNSNPDVIVSLSSCLGDTCIEDPTLLNEEEKERVIQELSCCLPAWVTRSQMLDLISICGSNIVEAVSNFFERETEFHEQVNSGQTSVPTPRCCPSNDSSPISKSSLNNTNSPLRNLDIFPSQVSKLTNSKLTKLRHTLPNQISPSKRKRSSESKPNKKVKVKAKSESSGSKQATITKFFSKAMPEIPGDTQSDQCETNPGESPKVEELLPTAAGNLYKHEIDQFIQIINGDESLKKQAITIIEKAKGDINKALDIYYCNSCNLGESEISVQGECDIDRPIEKKNVSQELRVIPDISMHRVLKDNVDVTHVSLPSEKYNPKEHACWIDGQPAPYLHLARTFNLLEDEKGKIKATSMLCNMFRSLLALSPEDVLPAVYLCTNKIAADHENVELNIGGSLVTTALEEACGTNRLKIREMYNKLGDLGDVAQECRQTQRLLAPPTPLLIKDIYSALRKISVQTGNGSTSRKKGIIVHLMRSCREKEMKFLVRTLVIIPRSWVHRSLEGGEVIPFQVGSVSYKS* 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2244 955 PANTHER DNA LIGASE 5 771 - -
Psa3g2244 955 MobiDBLite consensus disorder prediction 565 639 - -
Psa3g2244 955 Gene3D - 193 341 - -
Psa3g2244 955 MobiDBLite consensus disorder prediction 565 582 - -
Psa3g2244 955 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 747 927 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Psa3g2244 955 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 5 771 - -
Psa3g2244 955 SUPERFAMILY Metallo-hydrolase/oxidoreductase 48 364 IPR036866 -
Psa3g2244 955 CDD SNM1A-1C-like_MBL-fold 45 190 - -
Psa3g2244 955 Gene3D - 745 928 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Psa3g2244 955 Pfam DNA ligase N terminus 768 926 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Psa3g2244 955 MobiDBLite consensus disorder prediction 515 545 - -
Psa3g2244 955 Pfam DNA repair metallo-beta-lactamase 261 364 IPR011084 -
Psa3g2244 955 Gene3D - 47 363 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2244 Psa-Chr3 194226790 194232295 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2244 753 926 Core DNA Replication Machinery Family AT1G08130 36.782 2.06e-33 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2244 - - gmx:100807673 1290.4