Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2238 ATGGATGATCAAAATGAGTCAAATTCTCCTAATACATTGGTACAGTGTCGAATATGTCACGACGAAGACGAGGACTTAAACATGGATACACCTTGTTCTTGTTCTGGCACATTGCAGTATGCACATAGAATATGTGTGCAAAGATGGTGCAATGAGAAAGGCGATACTACTTGCGAGATTTGCCTACAGCAACTTAAAGGCTATACTGCTCCTCCACAAGCTCCTCTATTCCACTATAGGGGAAACTGGGAAATTCCAAGAATCGGTCTTAATAATCATCCGTTCTTAGCATTGTTTCCTGCTAATCATGAGTTTCTAGACTTTGACTTCGAATATTCAACTCCCTCTAGAAGGAGCCGTTTGTTCATTCGCATTGTTGCCATCATTTTTATCGTTCTGCTGATTTTGCGTCATACGCTTCCAATCATATTTATACTCGACGGAGTAGAAGAGTCTTCTTTGACAGTGCTTACGTTGCTAATGTGGGGAGTCACTGGAATAACTGTACCAGTGTATATAATGGTAAAAGCTTTTCAACAACTTCAAAACCAGGATCATAGTCCCCTTATGCAATTGCAATCACATGATGAAAGAAACATGAGGCAGTCTCAGTTGCGAGTCATTCATATTCAGTGA 636 0.4025 MDDQNESNSPNTLVQCRICHDEDEDLNMDTPCSCSGTLQYAHRICVQRWCNEKGDTTCEICLQQLKGYTAPPQAPLFHYRGNWEIPRIGLNNHPFLALFPANHEFLDFDFEYSTPSRRSRLFIRIVAIIFIVLLILRHTLPIIFILDGVEESSLTVLTLLMWGVTGITVPVYIMVKAFQQLQNQDHSPLMQLQSHDERNMRQSQLRVIHIQ* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2238 211 CDD RING_CH-C4HC3_MARCH 16 61 - -
Psa3g2238 211 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 5 198 IPR033275 -
Psa3g2238 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 5 198 - -
Psa3g2238 211 SMART ringv_2 15 62 IPR011016 GO:0008270
Psa3g2238 211 ProSiteProfiles Zinc finger RING-CH-type profile. 8 68 IPR011016 GO:0008270
Psa3g2238 211 Pfam Protein of unknown function (DUF3675) 67 177 IPR022143 -
Psa3g2238 211 SUPERFAMILY RING/U-box 13 65 - -
Psa3g2238 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 71 IPR013083 -
Psa3g2238 211 Pfam RING-variant domain 16 61 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2238 Psa-Chr3 193939877 193940966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2238 1 61 C3H Transcription Factor Family AT2G37950 39.062 2.91e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2238 - - gmx:100784696 255.758