Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2213 ATGGCTGTGAACAGATATGTCGATTATGATTCCATAGATTATGTTTCTCAATTGCCTGTTGGATACAGGTTTGATCCAACAGATGATGTTCTCATGAGCTTTTATCTGAGGAAGAAGATCTATAACCAACCTCTTACACTTCATGGAATTCTTCAGTTTGATGTGTTCCAAACTGAACCATGGATGCTACCATTTGATACAAGAAACTCATTTAGTGATAGGAAGTACTATTTTTTTGATATGAGGAACCATAGGTTTGAAAACATGGACATAAGAAAAGCTGGTAATGGTGAATGGAGAATTGTAGAAAAAAGAAGGGAAGTTTCTCTCAAAAGCCTTTATTTCATTGGGAGAAAGAACACTTTTGAGTATTGGAAGATGGAGGGAACACATGCTGTAAAAAGTGAATGGATGATGGAGGAGTTTCACATCAGTCCAATTCTTCATCCCAACATGAAGTCAAAATTAGGAGCATATAGAGTCTTTAAGATGAAGGTGGCAAAGGGTGAGAAGAAAGTTTCTACACCATCTGAGATTGATTTAACAATGGAGTGTGAAGATGAATCAGCCAACCCTTCTTCTCCATGA 588 0.3707 MAVNRYVDYDSIDYVSQLPVGYRFDPTDDVLMSFYLRKKIYNQPLTLHGILQFDVFQTEPWMLPFDTRNSFSDRKYYFFDMRNHRFENMDIRKAGNGEWRIVEKRREVSLKSLYFIGRKNTFEYWKMEGTHAVKSEWMMEEFHISPILHPNMKSKLGAYRVFKMKVAKGEKKVSTPSEIDLTMECEDESANPSSP* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2213 195 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 18 169 - -
Psa3g2213 195 Pfam No apical meristem (NAM) protein 19 144 IPR003441 GO:0003677|GO:0006355
Psa3g2213 195 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 18 169 - -
Psa3g2213 195 ProSiteProfiles NAC domain profile. 18 164 IPR003441 GO:0003677|GO:0006355
Psa3g2213 195 Gene3D NAC domain 27 171 IPR036093 GO:0003677|GO:0006355
Psa3g2213 195 SUPERFAMILY NAC domain 14 165 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2213 Psa-Chr3 192890641 192892025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2213 18 172 NAC Transcription Factor Family AT5G17260 31.056 7.04e-21 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa3g2213 NAM 3.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2213 - - cam:101501671 206.838