Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2209 ATGGGTCGTTGCCCATGTTTTGGGTCTAGAAAGAAGGAAAAAGTGAAAAACCTTAATGGCCATGAAGATGAAGAGGATGATGTCAACAACCTTAAATCTGTTGGGATTGCATCTGTTTCTGGAAGATCTTTAGAACGGACATCAGAAGCTACTCCGGAAGAGAATATCGACAGTTCTGATAAGGCGCAGATATTTACCTTCAGAGAGCTTGCGACGGCAACAAAAAATTTTAGGGATGAAACCTTTATTGGACAAGGTGGATTTGGAACTGTCTACAAAGGAAAGCTAGATAAAACTAATCAGATGGTAGCTGTTAAAAGACTTGATACAACTGGTGTCCAAGGGGAGAAAGAATTTTTAGTAGAGGTTCTCATGCTCTCTCTTCTACACCATCCCAACCTTGTTAATATGATCGGTTATTGCGCTGAAGGCGACCAACGGCTTCTTGTGTATGAATACATGCCTTTGGGATCCTTAGAATCTCATCTCCATGATCTTTTCCCTGATAAAGAACCGCTCGATTGGAATACCAGAATGATGATAGCTGCTGGTGCTGCAAGAGGACTAAACTATCTCCACCACGAAGCAAAGCCTTCTGTTATATACAGAGATTTGAAATCATCCAACATACTTTTGGATGAAAGATTCTGTCCTAGGCTTTCTGATTTCGGGCTTGCGAAATTCGGTCCGACGGGAGACCAATCGTATGTCGCCACTAGAGTCATGGGAACACATGGTTATTGTGCACCTGAGTATGCAACTACTGGAAAATTAACAATGAGATCTGACATCTATAGTTTCGGAGTCGTGTTATTGGAGCTAATAACAGGACGTAGAGCGTATGACGATAGTCGTGGCCACGACAAGCATCTCGTCGATTGGGCGCGGCAGTTGTTCAGAGAGAGAAGTAATTATCCAAAACTAGCCGATCCAAATTTGCAAGGTCACTTCCCTATATCTGGTCTAAGGATGGCCATTGAAATGGCGTGCATGTGTCTTCGAGAAGAGCCACGTCACCGGCCTAGTGCAGCCGATATAGTATTAGCCCTAGATTACTTGTCAGCCAAGCAAAATGTTCCAAAAGTATCTGGAAAAAATAGCACGGGAAGCATGGAGATCGAAAACTCTCCGAAAGAATCAACGATGATTATGCCGATTTTGCCTAAAGACTTGCTAAGAGAGCAAGCTGTTGCAGAGGCGAAACAGTGGGGGGAGACATGGAGAGAAAAGAGAAAACAAAGTTGTGGAAATAGTCCTGAGGCAATAACAAGATTAGATTGCAGCTAG 1287 0.432 MGRCPCFGSRKKEKVKNLNGHEDEEDDVNNLKSVGIASVSGRSLERTSEATPEENIDSSDKAQIFTFRELATATKNFRDETFIGQGGFGTVYKGKLDKTNQMVAVKRLDTTGVQGEKEFLVEVLMLSLLHHPNLVNMIGYCAEGDQRLLVYEYMPLGSLESHLHDLFPDKEPLDWNTRMMIAAGAARGLNYLHHEAKPSVIYRDLKSSNILLDERFCPRLSDFGLAKFGPTGDQSYVATRVMGTHGYCAPEYATTGKLTMRSDIYSFGVVLLELITGRRAYDDSRGHDKHLVDWARQLFRERSNYPKLADPNLQGHFPISGLRMAIEMACMCLREEPRHRPSAADIVLALDYLSAKQNVPKVSGKNSTGSMEIENSPKESTMIMPILPKDLLREQAVAEAKQWGETWREKRKQSCGNSPEAITRLDCS* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2209 428 Pfam Protein kinase domain 78 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2209 428 SUPERFAMILY Protein kinase-like (PK-like) 58 350 IPR011009 -
Psa3g2209 428 Gene3D Transferase(Phosphotransferase) domain 1 154 375 - -
Psa3g2209 428 CDD STKc_IRAK 83 347 - -
Psa3g2209 428 ProSiteProfiles Protein kinase domain profile. 77 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2209 428 SMART serkin_6 77 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g2209 428 Gene3D Phosphorylase Kinase; domain 1 37 153 - -
Psa3g2209 428 PANTHER OS07G0668900 PROTEIN 4 374 - -
Psa3g2209 428 PANTHER OS07G0668900 PROTEIN 4 374 - -
Psa3g2209 428 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Psa3g2209 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2209 Psa-Chr3 192664469 192667524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2209 6 408 Glycoside Hydrolase AT3G07070 53.365 5.57e-144 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Psa3g2209 Pkinase 1.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2209 K13430 - gmx:100805675 573.548