Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2201 ATGTCGTTTCCCTGCGACTACTGCGACACAAGAAACGCGGTTCTATACTGCAGACCAGACTCCGCGAAACTCTGCTTAGTTTGCGACCAGCACGTGCACTCTGCTAACGCACTCGCGCTCAAGCACGTGCGTTATCAGATTTGTCAAAACTGTAAAAACGACGCCGCTTCGGTTCGTTGCTTCACCGATAACCTAGTTCAATGCCTCCGCTGTGATTGGGACGCTCACGGCGGTGATTCTTCTTCTTCTTCTTCTTCCCATCACCATAACCACAACCGCCGCCGTCTGGAAGGTCTCACCGGATGTCCTTCCGTTCACGAGATTGTCATTGCGTTAGGGCTTGATTTGAAGCCGAACGACGCGGTTTTTGTGGCGGATTTTGAAGGTCCTGTTGTTCCGGTTGTTCACAATAGGGATGAGATTTATGAACAGGTGGCGGAAGTTGCAAAGAGAAAGAGGAATTTGGAAGCTGAAAATGATTGTAGATTTAGTGATTGTAGCAATGAAGTTGATGATTTGTTGTTGCTTCAGCAAACTCCGTTTACTTCTTTGCTCAATTTTTCATCTGAATTCGATGTCGGCGCTAAGAAAATTAATAACGATTATGGAAATGAATCTGGTGTTCTTCTCTGGAATCGTAACCCTACTTATCAGCCTCCTCAGGTCTGGGATTTTCAATTACAGAAATCTAGAGATATGACATATGATGGTGTAGAAGTAGTTCCAAAATCATTGCAGGATGTGCATTACTCAACACTTGGTGATGATTTTCTATCAAGAAGTAATCATTCAGATCAGTCATCATCAAGCCATGTGAAGAAGAAAGTAGATAGCAACAAGAAAACTAGAGATGGGTTACCAACTGAGTCCAAATTAGTTGAATCCATAACATACAATGGTGCCGCCGACAATGTACCAGTTATGGAGTATCTTTTGAGTGGGAGTGAAAATGTTAGTAACATAAATGGCAAGGTTAGCTTGGAAGAACAAGTAAGGAATAGAGGGGATGCCATGTTACGCTATAAGGAGAAGAAGAAAACTCGAAGGTTTGACAAGCACATTCGATATGAATCAAGGAAGGCTAGGGCTGATACGAGAAAGAGAGTGAGAGGGAGATTTGTTAAGGCAGGTGATGATGACATTCAAGAAGGATGA 1155 0.4329 MSFPCDYCDTRNAVLYCRPDSAKLCLVCDQHVHSANALALKHVRYQICQNCKNDAASVRCFTDNLVQCLRCDWDAHGGDSSSSSSSHHHNHNRRRLEGLTGCPSVHEIVIALGLDLKPNDAVFVADFEGPVVPVVHNRDEIYEQVAEVAKRKRNLEAENDCRFSDCSNEVDDLLLLQQTPFTSLLNFSSEFDVGAKKINNDYGNESGVLLWNRNPTYQPPQVWDFQLQKSRDMTYDGVEVVPKSLQDVHYSTLGDDFLSRSNHSDQSSSSHVKKKVDSNKKTRDGLPTESKLVESITYNGAADNVPVMEYLLSGSENVSNINGKVSLEEQVRNRGDAMLRYKEKKKTRRFDKHIRYESRKARADTRKRVRGRFVKAGDDDIQEG* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2201 384 CDD Bbox1_BBX-like 4 47 - -
Psa3g2201 384 MobiDBLite consensus disorder prediction 267 288 - -
Psa3g2201 384 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 379 - -
Psa3g2201 384 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Psa3g2201 384 SMART bboxneu5 4 47 IPR000315 GO:0008270
Psa3g2201 384 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-RELATED 3 379 - -
Psa3g2201 384 Coils Coil 138 158 - -
Psa3g2201 384 Pfam CCT motif 334 376 IPR010402 GO:0005515
Psa3g2201 384 CDD Bbox1 47 76 - -
Psa3g2201 384 ProSiteProfiles CCT domain profile. 334 376 IPR010402 GO:0005515
Psa3g2201 384 MobiDBLite consensus disorder prediction 260 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2201 Psa-Chr3 192414403 192418130 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2201 5 378 C2C2-CO-like Transcription Factor Family AT2G33500 35.446 3.92e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Psa3g2201 CCT 1.9e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2201 - - gmx:100786838 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2201 3 192414403 192418130 Psa3g2201 3 192414403 192418130 ECH