Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2197 ATGATGATGAATGAGGTAGAAGGAAAGAAAGTTGTGGTTCAGAATACCAAGGCGTGTGCTTTCATGGCAGGTGTTGAATCTCGTCAAGTTGAGTTCGTTAACGTAACCAAAAACACTGTGAACAGATCGGCTCTTCATCGTCCTTTCCGTGGTGATACTTTTGTTGCTGCTGCATTTGGAACTGTTCACAGGAGGAAAAGGATGGCAAGACAGAGAAGATCTTCATCTTCTTCATCTTCTTCTTCCACCATGAACATCAATCTCAGAAACCGTCCATCCAATCCTCCTCCTCCTCCTCCTACTGCTTCTACTACCACCACCATCTCGCACGTGCCACTACCTCCCATTCCTCCACTTTTTACCAAACCCCCTCCTGCACAAGTTGAAATTGATCAAAAGAGGCTGAGGTTCCTTTTCCAAAAAGAGCTGAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGGTTTTGCCAAAGAAAGCGGCAGAGGCTTTCCTTCCTGCCCTTGACTCAAAGGAAGGAATCCTTATCAACATGGATGATATCGATGGTATTCATGTATGGTGCTTCAAGTACAGGTATTGGCCAAACAATAACAGTAGGATGTATGTGCTTGAAAACACTGGAGACTTTGTTAACATGCATCGTCTACGCCTTGGAGATACCATTGTGGTTTATCAGGATAATCAGAGTCACAATTATGTAATTCAGGCAAAAAAGGCTCTTGGTCGTGATCGTGATGAAGATAAGTATATTGAGAGAACTCACACAACCAATGATATCTTTCTTAATGATTTTAAGCTGAACACGAATTTCTTCGATGTTGCCTATCCTGCCTATCCTGAAGTAACCTATCCCTATCCTGAAATCAATGACACCATGAATGATACCATGAAAGATAAAGATAACGGGATGTCATTTATATATGACACAACAGTTTCAAATGACTCTCCATTTGATTTTTTGGGTGGATCCATGACAAATTACCCAAAGATGGGATCATTTGAATCTTTTGCCTCGGTTGAGAATCTGTCACTTGATGACTTCTACTGA 1050 0.4162 MMMNEVEGKKVVVQNTKACAFMAGVESRQVEFVNVTKNTVNRSALHRPFRGDTFVAAAFGTVHRRKRMARQRRSSSSSSSSSTMNINLRNRPSNPPPPPPTASTTTTISHVPLPPIPPLFTKPPPAQVEIDQKRLRFLFQKELKNSDVSSLRRMVLPKKAAEAFLPALDSKEGILINMDDIDGIHVWCFKYRYWPNNNSRMYVLENTGDFVNMHRLRLGDTIVVYQDNQSHNYVIQAKKALGRDRDEDKYIERTHTTNDIFLNDFKLNTNFFDVAYPAYPEVTYPYPEINDTMNDTMKDKDNGMSFIYDTTVSNDSPFDFLGGSMTNYPKMGSFESFASVENLSLDDFY* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2197 349 SMART B3_2 139 241 IPR003340 GO:0003677
Psa3g2197 349 Gene3D - 135 255 IPR015300 -
Psa3g2197 349 CDD B3_DNA 137 239 IPR003340 GO:0003677
Psa3g2197 349 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 31 349 - -
Psa3g2197 349 ProSiteProfiles B3 DNA-binding domain profile. 139 241 IPR003340 GO:0003677
Psa3g2197 349 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 31 349 IPR044800 GO:0003700
Psa3g2197 349 Pfam B3 DNA binding domain 139 236 IPR003340 GO:0003677
Psa3g2197 349 MobiDBLite consensus disorder prediction 73 90 - -
Psa3g2197 349 MobiDBLite consensus disorder prediction 63 106 - -
Psa3g2197 349 SUPERFAMILY DNA-binding pseudobarrel domain 137 235 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2197 Psa-Chr3 192231796 192236533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2197 59 349 B3 DNA Binding Superfamily AT3G26790 52.258 1.80e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa3g2197 B3 2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2197 - - gmx:100783961 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2197 3 192231796 192236533 Psa3g2197 3 192231796 192236533 ECH