Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2179 ATGGAACGTTACACGCTACCCTTACCACAAGGACTTCACAATTCTCTTACTATACCTTGGACTGAACCACAGCAACAACAACAATCACCTTCATGGTCCACACCTAACTCCGAACCTAAACTCAACAACAACAACAACAACGACCAAGACATTGCCATTGCTATTGCCATGGCTGCTTCTTCTACCTCCCTCCCTTTCTTCAAACCCGAACCTGATAACTTCTACAACCTCAACTCCACTACTACAACAACCAACAACGTTGTTCCGTTTGTTTCAAATCCCAATTCTACAAATGATAATTTTCTCATGCACCAAAACACAAACACCATGGATTCAATTTCAAATCCACACCCTTTCTTCCACAACAACAACAACAACTACTTCTTCAACAATAGCAACAACAATAATAACCCTTTTGAAATGGGATTCGAAAATGGATTCTTTATGGGAAACAACAACAACACCAACGCTTCCAATTCACCTGTTTTTATGGGTGCCTCCCTCGACCTGACTTCCGCTTCCGAGTTTCCACCGACTCTTGAACTCGATGCTTCTGTACCACCTTTCAGTGCTTCGTTTTCTATGCCTCTTGAGCTGTCTCAACCGCAACCTCAACAGCAGCAGCAGCAGCAGCAACAGCAGCCGACCACGCTGTTTCAGAAGCGGCGAGGGGCGTTGGAGATTCCGAGATTGGAGACGGTGGGGAACAAGAAGAAGAGAAAGGTGGAGAAAAAATGGGAGGAAGATGGAAATGGTGGTGGTGAGGATGATGTTGAAGATTTCTCTGAGTTGAATTATGATTCTGATGAGAATGGAAATGATTTGAACAATTCCAATGGGACTGTTGTTACTGGTGGAGATCAAAAGGGGAAGAAGAAGAAGGGGCTTCCTGCCAAAAATCTCATGGCGGAGAGGCGTCGGAGGAAGAAACTCAATGATAGGCTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGACAGGGCTTCAATACTTGGTGATGCAGTTGACTACTTGAAGGAGCTACTGCAGCGGATTAACAATCTTCATAACGAACTGGAATCAACTCCTCCTGGCTCATTGCTGCAACCTTCTGCAAGTGCAAGTTTTCACCCGTTGACACCCACTCCACCGACTCTTCCTTGCCGAGTCAAGGAAGATCTATATCCTGGTGACTTGCTAAGCCCCAAAAACCAATCTCCTAAGGTGGAAGTTAGGGTAAGGGAAGGGAGAGCGGTCAACATTCATATGTTTTGTACCCGAAGACCAGGACTTTTGCTTTCTACCATGAGGGCTTTGGATAACCTTGGATTGGATGTTCAACAAGCTGTTATTAGTTGTTTCAATGGCTTTGCTTTGGATGTTTTCAGAGCCGAGCAATGCAGAGAAGGTCAGGATGTTCCCCGAGCAAATTAA 1422 0.4501 MERYTLPLPQGLHNSLTIPWTEPQQQQQSPSWSTPNSEPKLNNNNNNDQDIAIAIAMAASSTSLPFFKPEPDNFYNLNSTTTTTNNVVPFVSNPNSTNDNFLMHQNTNTMDSISNPHPFFHNNNNNYFFNNSNNNNNPFEMGFENGFFMGNNNNTNASNSPVFMGASLDLTSASEFPPTLELDASVPPFSASFSMPLELSQPQPQQQQQQQQQQPTTLFQKRRGALEIPRLETVGNKKKRKVEKKWEEDGNGGGEDDVEDFSELNYDSDENGNDLNNSNGTVVTGGDQKGKKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINNLHNELESTPPGSLLQPSASASFHPLTPTPPTLPCRVKEDLYPGDLLSPKNQSPKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCREGQDVPRAN* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2179 473 MobiDBLite consensus disorder prediction 15 38 - -
Psa3g2179 473 MobiDBLite consensus disorder prediction 225 251 - -
Psa3g2179 473 CDD ACT_UUR-ACR-like 417 458 - -
Psa3g2179 473 SMART finulus 301 350 IPR011598 GO:0046983
Psa3g2179 473 PANTHER BHLH TRANSCRIPTIONAL FACTOR 88 470 - -
Psa3g2179 473 MobiDBLite consensus disorder prediction 197 220 - -
Psa3g2179 473 MobiDBLite consensus disorder prediction 252 267 - -
Psa3g2179 473 Coils Coil 338 358 - -
Psa3g2179 473 MobiDBLite consensus disorder prediction 268 285 - -
Psa3g2179 473 Gene3D - 287 358 IPR036638 GO:0046983
Psa3g2179 473 CDD bHLH_AtAMS_like 298 362 - -
Psa3g2179 473 Pfam Helix-loop-helix DNA-binding domain 302 344 IPR011598 GO:0046983
Psa3g2179 473 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 88 470 - -
Psa3g2179 473 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 295 344 IPR011598 GO:0046983
Psa3g2179 473 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 298 364 IPR036638 GO:0046983
Psa3g2179 473 MobiDBLite consensus disorder prediction 197 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2179 Psa-Chr3 190791814 190794977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2179 119 461 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 54.692 1.80e-102 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa3g2179 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2179 - - mtr:MTR_7g083900 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g2179 3 190791814 190794977 Psa3g2179 3 190791814 190794977 ECH