Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g2161 ATGGTTGCGAAATCTTTGGAGATTCACGATTCAATTGCGAACGACGGTGGTAGTGGTGTCGTTTCACAACATTTGATGGTTTCTGCGGAGATTGAGATGAGCCCTAAGCTTAATATATCAGTGAAATACGGTGCAAAAAAAGCTGAACCTAAAGATACACCAATGTCGCAGCGGAGATCGAGCTCTCGAATCCAAGCTGCTAAGCTAAAAGAGGTTGAAGAGGTTAAGCTTCGACGGAATGTAGAGGTTGTTGAAGATCGAAAGAAATCGAGCGTGGTTGTGACGGCTAAGGGGAAGTCGAATAAACGTGTTAAGAAAAGTCACGGTGAGGGCGAGGAAGAGAGCACGGTTAAAGAAGAGGTTGTTTCCGAGTCACAGTCAAAGAGCAATGAAGAGGATGCTTCGGAGAAACAGGTGAAGAACAAGGAAGAGGTTGCTTCGGAGAAACTTCCAAAGAAGAAGAAGTCTGCAATGGATGCGAAGCGTGAGCTGATGGAGGTTTGGGATGAAAAAATGAAGGTGGATTCGGAAAATACAGTTGATGCGTCTGCTGAAAAGAGTTATGCAGCTAAGGTGAAGGATACTATTAGACTGTTTAATAAACACTATCTCCATTTGGTTCAGGAGGAAGAGGAGAGGTGTGCTAAAGCAAGAGCTGAAGCTGAGAAGAAGAAGAAATCTCCCAAGAAGTCTCCTAAGAAATCTCCTAAGAAATCTCCTGGGAAGAAATCTCCCAAAAAATCTAAGTCATCTGCTGGGAAGAAAAATGCTAAGAAAGATACTTCGCATATAGAACCAAAGAGCGCAGCCAAACGACCTGATCTGAAGGCCTTAACCAAGATGATGCAAAATAGCGAGATACTGCACCCTGAAAAAAGAATTGGCGATATTCCAGGTGTTGAGGTTGGATATCAGTTCTATTCTCGTGCCGAAATGGTTGCTATTGGTTTTCATAGCCACTGGTTAAATGGAATTGATTATATGGGCCAATCTTATTCCAAAGTGTACAACAGCTACAATCTCCCAATTGCTGTGGCCATTGTTATTTCTGGAATGTATGAAGATGACCTTGATAATGCCGAAGATGTCATTTACACTGGTCAAGGTGGCCACAACCTGACTGGTAATAAGCGACAAATGGGAGATCAGAAAATGGAGCGGGGTAACTTAGCACTCAAGAACTCTTCAGAGCAATGTGTGCCAGTAAGGGTGATTCGAGGTCATAACTCTCGTGACAGTTATACTCGTAAAGTTTATACATATGATGGATTGTACAAGGTTGTCAATTATTGGGCAGAGAAGGGAATATCCGGCTTCACAGTCTACAAGTTTCGGCTTAGGAGGGTTGAGGGACAGCCTACATTGACCACAAATCAGGTTTATTTCACAAGTGGACGCGTACCTCAGTCTGTTGCAGAAATACGAGGGCTAGTATGTGAGGATATCACTGGAGGTCAGGAAGTTATACCAATTCCTGCTACAAATTTGGTGGATGACCCTCCTGTTCCACCCACAGGTTTCAAGTATTTTAAGGCTCTGAAGGTTGCAACAAGTGTTACGCTTCCTGCGAATGCCACTGGGTGCAAATGCAAAGGTAGCTGTACTGATCCAACAACCTGTGAATGTGCAAAGCGCAATGGCTCTGAATTTCCCTATGTATCTAGGGATGGTGGCAGATTAGTTGAAGCTAAAGATGTTGTGTTTGAATGTGGCCCCAATTGTGGTTGTGGTCCTAGTTGTGTGAATCGGATTTCTCAAAAAGGACCTCGATATCGTCTGGAGGTTTTTCGCACAGCAAAAAAAGGATGGGCTGTACGATCCTGGGATTTTATTCCATCTGGGGCACCCGTATGCGAGTACACGGGAATTCTCGGCAGGACTGACGACGTTGACAGTTGTTTAGAAAACAACTATATATTTGAGATTGATTGCCTCCAGACTATTAAAGGTCTTGGAGGAAGGGAGAGGCGGTCGCAAAATGTACCATATGCTGCCAAGCTTTTGGACAAATACGATGACCAAAGTCCTGATAGCGCACCAGAGTTTTGTATTGACGCAGGATCTACTGGAAATATTGCTAGGTTTATAAACCATTGTTGTGAGCCTAATTTGTTTGTACAATGTGTTTTGAGCACACACCATGATTTGCGTCTGGCTCGAGTGATGCTGTTTGCCGCTGACAACATACCCCCTTTACAGGAACTGACATATGACTATGGCTATGCTCTTGATAGCGTCTTGGACTCTGATGGGAAGATAAAGCAAATGGCGTGTTATTGTGGAGCTTCAGGCTGCAGAAAGCGATTATTCTAA 2313 0.438 MVAKSLEIHDSIANDGGSGVVSQHLMVSAEIEMSPKLNISVKYGAKKAEPKDTPMSQRRSSSRIQAAKLKEVEEVKLRRNVEVVEDRKKSSVVVTAKGKSNKRVKKSHGEGEEESTVKEEVVSESQSKSNEEDASEKQVKNKEEVASEKLPKKKKSAMDAKRELMEVWDEKMKVDSENTVDASAEKSYAAKVKDTIRLFNKHYLHLVQEEEERCAKARAEAEKKKKSPKKSPKKSPKKSPGKKSPKKSKSSAGKKNAKKDTSHIEPKSAAKRPDLKALTKMMQNSEILHPEKRIGDIPGVEVGYQFYSRAEMVAIGFHSHWLNGIDYMGQSYSKVYNSYNLPIAVAIVISGMYEDDLDNAEDVIYTGQGGHNLTGNKRQMGDQKMERGNLALKNSSEQCVPVRVIRGHNSRDSYTRKVYTYDGLYKVVNYWAEKGISGFTVYKFRLRRVEGQPTLTTNQVYFTSGRVPQSVAEIRGLVCEDITGGQEVIPIPATNLVDDPPVPPTGFKYFKALKVATSVTLPANATGCKCKGSCTDPTTCECAKRNGSEFPYVSRDGGRLVEAKDVVFECGPNCGCGPSCVNRISQKGPRYRLEVFRTAKKGWAVRSWDFIPSGAPVCEYTGILGRTDDVDSCLENNYIFEIDCLQTIKGLGGRERRSQNVPYAAKLLDKYDDQSPDSAPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHHDLRLARVMLFAADNIPPLQELTYDYGYALDSVLDSDGKIKQMACYCGASGCRKRLF* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g2161 770 ProSiteProfiles Post-SET domain profile. 754 770 IPR003616 -
Psa3g2161 770 SMART set_7 591 746 IPR001214 GO:0005515
Psa3g2161 770 Pfam SET domain 602 740 IPR001214 GO:0005515
Psa3g2161 770 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 84 770 IPR025794 GO:0016571
Psa3g2161 770 MobiDBLite consensus disorder prediction 85 159 - -
Psa3g2161 770 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 58 769 - -
Psa3g2161 770 Coils Coil 200 227 - -
Psa3g2161 770 MobiDBLite consensus disorder prediction 43 65 - -
Psa3g2161 770 Pfam Pre-SET motif 483 583 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa3g2161 770 ProSiteProfiles SET domain profile. 591 740 IPR001214 GO:0005515
Psa3g2161 770 SMART preset_2 479 575 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa3g2161 770 MobiDBLite consensus disorder prediction 105 159 - -
Psa3g2161 770 SUPERFAMILY SET domain 476 746 IPR046341 -
Psa3g2161 770 Pfam SAD/SRA domain 294 452 IPR003105 -
Psa3g2161 770 ProSiteProfiles YDG domain profile. 295 448 IPR003105 -
Psa3g2161 770 SMART G9a_1 290 452 IPR003105 -
Psa3g2161 770 SUPERFAMILY PUA domain-like 277 467 IPR015947 -
Psa3g2161 770 MobiDBLite consensus disorder prediction 227 253 - -
Psa3g2161 770 MobiDBLite consensus disorder prediction 254 274 - -
Psa3g2161 770 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 58 769 - -
Psa3g2161 770 MobiDBLite consensus disorder prediction 217 276 - -
Psa3g2161 770 Gene3D - 278 465 IPR036987 -
Psa3g2161 770 Gene3D SET domain 472 770 IPR046341 -
Psa3g2161 770 ProSiteProfiles Pre-SET domain profile. 526 588 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g2161 Psa-Chr3 190233565 190242192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g2161 281 770 EF-hand Containing Proteins AT5G13960 66.870 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa3g2161 SAD_SRA 8.4e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g2161 K11420 - gmx:100796701 956.051